HPVomics

Predicted highly potential siRNAs (HR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV16	L2	874	892	ccagcattaacctctaggc	gcctagaggttaatgctgg	55.8	49
2	HPV16	L2	607	625	gttagcacaaaccctaaca	tgttagggtttgtgctaac	54.95	38
3	HPV16	L2	877	895	gcattaacctctaggcgta	tacgcctagaggttaatgc	52.72	20
4	HPV16	L2	632	650	ctagtagcacacccatacc	ggtatgggtgtgctactag	51.69	32
5	HPV16	L2	631	649	actagtagcacacccatac	gtatgggtgtgctactagt	51.63	45
6	HPV16	L2	892	910	cgtactggcattaggtaca	tgtacctaatgccagtacg	50.5	15
7	HPV31	L2	1217	1235	ggcctgatgtacctataga	tctataggtacatcaggcc	58.47	46
8	HPV31	L2	281	299	gcattgaccctgtaggtcc	ggacctacagggtcaatgc	57.23	17
9	HPV31	L2	77	95	gtacttgtccatcagacgt	acgtctgatggacaagtac	55.82	35
10	HPV31	L2	246	264	atctgaggcaagtatacct	aggtatacttgcctcagat	54.75	33
11	HPV31	L2	920	938	ctcgtagtggtgctactat	atagtagcaccactacgag	53.58	50
12	HPV31	L2	280	298	agcattgaccctgtaggtc	gacctacagggtcaatgct	52.97	50
13	HPV31	L2	859	877	cttacctcacgtaggaaca	tgttcctacgtgaggtaag	52.53	43
14	HPV31	L2	1149	1167	gtctgcctatgtacctaca	tgtaggtacataggcagac	52.38	46
15	HPV31	L2	1378	1396	acagatgtctctgtggcgg	ccgccacagagacatctgt	51.89	20
16	HPV31	L2	1214	1232	ctgggcctgatgtacctat	ataggtacatcaggcccag	51.54	25
17	HPV31	L2	1148	1166	tgtctgcctatgtacctac	gtaggtacataggcagaca	51.15	25
18	HPV31	L2	1016	1034	gggcgtctgcaactactac	gtagtagttgcagacgccc	50.63	48
19	HPV31	L2	79	97	acttgtccatcagacgtta	taacgtctgatggacaagt	50.54	35
20	HPV31	L2	216	234	tgtccctcttagtacacgt	acgtgtactaagagggaca	50.33	18
21	HPV31	L2	1379	1397	cagatgtctctgtggcggc	gccgccacagagacatctg	50.3	47
22	HPV31	L2	1382	1400	atgtctctgtggcggccta	taggccgccacagagacat	50.29	39
23	HPV31	L2	1215	1233	tgggcctgatgtacctata	tataggtacatcaggccca	50.24	48
24	HPV33	L2	203	221	ggactggctatgtacctat	ataggtacatagccagtcc	58.49	25
25	HPV33	L2	38	56	ctgcaacacaactatacca	tggtatagttgtgttgcag	58.1	45
26	HPV33	L2	37	55	tctgcaacacaactatacc	ggtatagttgtgttgcaga	57.7	35
27	HPV33	L2	630	648	aacatcaagcacgcccatt	aatgggcgtgcttgatgtt	55.95	31
28	HPV33	L2	861	879	acataggcctgctattaca	tgtaatagcaggcctatgt	55.76	43
29	HPV33	L2	252	270	cttgcagcctatacgtcct	aggacgtataggctgcaag	54.38	9
30	HPV33	L2	253	271	ttgcagcctatacgtcctc	gaggacgtataggctgcaa	53.27	26
31	HPV33	L2	289	307	gttggacctttagactcgt	acgagtctaaaggtccaac	53.19	18
32	HPV33	L2	990	1008	tattgtgcctttagaccac	gtggtctaaaggcacaata	53.05	47
33	HPV33	L2	278	296	ctgtagacactgttggacc	ggtccaacagtgtctacag	52.56	48
34	HPV33	L2	884	902	gtagacatactgtgcgttt	aaacgcacagtatgtctac	51.98	8
35	HPV33	L2	434	452	catctgttggggagtcatc	gatgactccccaacagatg	51.64	50
36	HPV33	L2	626	644	atgtaacatcaagcacgcc	ggcgtgcttgatgttacat	51.51	31
37	HPV33	L2	552	570	ttcccctactgttagcaca	tgtgctaacagtaggggaa	51.33	47
38	HPV33	L2	1093	1111	gtttatgctgacgatgtgg	ccacatcgtcagcataaac	51.13	23
39	HPV33	L2	629	647	taacatcaagcacgcccat	atgggcgtgcttgatgtta	50.82	39
40	HPV33	L2	867	885	gcctgctattacatctcgt	acgagatgtaatagcaggc	50.62	27
41	HPV33	L2	989	1007	ctattgtgcctttagacca	tggtctaaaggcacaatag	50.42	46
42	HPV33	L2	249	267	ccccttgcagcctatacgt	acgtataggctgcaagggg	50.32	5
43	HPV33	L2	627	645	tgtaacatcaagcacgccc	gggcgtgcttgatgttaca	50.31	27
44	HPV33	L2	247	265	atccccttgcagcctatac	gtataggctgcaaggggat	50.2	38
45	HPV18	L2	907	925	gcaactatgtttacccgca	tgcgggtaaacatagttgc	56.99	7
46	HPV18	L2	164	182	gtggacttggcataggtac	gtacctatgccaagtccac	55.42	44
47	HPV18	L2	88	106	gatgttgttcctaaggtgg	ccaccttaggaacaacatc	54.76	49
48	HPV18	L2	937	955	ataggtgctagggttcact	agtgaaccctagcacctat	53.62	43
49	HPV18	L2	1226	1244	ctactacctctgtatggcc	ggccatacagaggtagtag	53.62	31
50	HPV18	L2	246	264	ggatgttggtcctacacgt	acgtgtaggaccaacatcc	53.22	23
51	HPV18	L2	909	927	aactatgtttacccgcagc	gctgcgggtaaacatagtt	53.15	40
52	HPV18	L2	906	924	ggcaactatgtttacccgc	gcgggtaaacatagttgcc	52.82	7
53	HPV18	L2	293	311	ccacagacccatctattgt	acaatagatgggtctgtgg	52.5	43
54	HPV18	L2	1189	1207	gtgcctgtatacacgggtc	gacccgtgtatacaggcac	52.19	16
55	HPV18	L2	162	180	gggtggacttggcataggt	acctatgccaagtccaccc	51.87	37
56	HPV18	L2	347	365	gtgcacctaggcctacgtt	aacgtaggcctaggtgcac	51.74	22
57	HPV18	L2	400	418	ggtacaactacacctgcgg	ccgcaggtgtagttgtacc	51.11	39
58	HPV18	L2	908	926	caactatgtttacccgcag	ctgcgggtaaacatagttg	51.11	14
59	HPV18	L2	913	931	atgtttacccgcagcggta	taccgctgcgggtaaacat	51.01	43
60	HPV18	L2	1186	1204	gatgtgcctgtatacacgg	ccgtgtatacaggcacatc	50.94	27
61	HPV18	L2	242	260	tggtggatgttggtcctac	gtaggaccaacatccacca	50.86	43
62	HPV18	L2	349	367	gcacctaggcctacgttta	taaacgtaggcctaggtgc	50.84	12
63	HPV18	L2	403	421	acaactacacctgcggttt	aaaccgcaggtgtagttgt	50.64	10
64	HPV18	L2	404	422	caactacacctgcggtttt	aaaaccgcaggtgtagttg	50.6	18
65	HPV18	L2	165	183	tggacttggcataggtact	agtacctatgccaagtcca	50.58	15
66	HPV18	L2	869	887	ggcgtgggactgttcgctt	aagcgaacagtcccacgcc	50.38	12
67	HPV18	L2	856	874	gctttaacatccaggcgtg	cacgcctggatgttaaagc	50.33	37
68	HPV18	L2	348	366	tgcacctaggcctacgttt	aaacgtaggcctaggtgca	50.3	14
69	HPV18	L2	346	364	ggtgcacctaggcctacgt	acgtaggcctaggtgcacc	50.1	14
70	HPV26	L2	764	782	ctgcatatgaacctataga	tctataggttcatatgcag	58.88	46
71	HPV26	L2	319	337	ttggtggaggaatctagta	tactagattcctccaccaa	56.52	49
72	HPV26	L2	1298	1316	ctaacttacctgcaatagt	actattgcaggtaagttag	55.11	45
73	HPV26	L2	1397	1415	cagatggctttgtggcgta	tacgccacaaagccatctg	54.97	26
74	HPV26	L2	412	430	acacctgctgtgttggaca	tgtccaacacagcaggtgt	54.48	48
75	HPV26	L2	318	336	tttggtggaggaatctagt	actagattcctccaccaaa	54.43	50
76	HPV26	L2	662	680	gagtgtcagctcctcgttt	aaacgaggagctgacactc	52.82	24
77	HPV26	L2	796	814	tatgcttccagtagtactg	cagtactactggaagcata	52.44	41
78	HPV26	L2	795	813	atatgcttccagtagtact	agtactactggaagcatat	52.29	20
79	HPV26	L2	1131	1149	accagttccaagatatgcc	ggcatatcttggaactggt	52.2	45
80	HPV26	L2	913	931	gccactatgaaaacacgta	tacgtgttttcatagtggc	51.91	29
81	HPV26	L2	348	366	tggagcccctatacctaca	tgtaggtataggggctcca	51.83	46
82	HPV26	L2	664	682	gtgtcagctcctcgtttgt	acaaacgaggagctgacac	51.67	24
83	HPV26	L2	320	338	tggtggaggaatctagtat	atactagattcctccacca	51.61	50
84	HPV26	L2	58	76	acatgtaaggccgctggta	taccagcggccttacatgt	51.13	35
85	HPV26	L2	1084	1102	gttcctagcatacatacgc	gcgtatgtatgctaggaac	51.08	16
86	HPV26	L2	665	683	tgtcagctcctcgtttgta	tacaaacgaggagctgaca	51.05	35
87	HPV26	L2	244	262	gttgtggatatcggcccta	tagggccgatatccacaac	50.99	42
88	HPV26	L2	1304	1322	tacctgcaatagttgtgca	tgcacaactattgcaggta	50.85	44
89	HPV26	L2	663	681	agtgtcagctcctcgtttg	caaacgaggagctgacact	50.71	43
90	HPV26	L2	1302	1320	cttacctgcaatagttgtg	cacaactattgcaggtaag	50.41	47
91	HPV26	L2	1239	1257	agacatttacacgcccaca	tgtgggcgtgtaaatgtct	50.37	47
92	HPV26	L2	488	506	atattgaaccccctataga	tctatagggggttcaatat	50.17	46
93	HPV26	L2	343	361	caatctggagcccctatac	gtataggggctccagattg	50.06	36