HPVomics

Predicted highly potential siRNAs (LR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV44	E4	127	145	gtactgtgcaagacgtatc	gatacgtcttgcacagtac	56.74	5
2	HPV44	E4	124	142	ctagtactgtgcaagacgt	acgtcttgcacagtactag	55.91	38
3	HPV44	E4	289	307	acaacgccagaaacaccgt	acggtgtttctggcgttgt	54.56	9
4	HPV44	E4	126	144	agtactgtgcaagacgtat	atacgtcttgcacagtact	53.83	15
5	HPV44	E4	129	147	actgtgcaagacgtatcca	tggatacgtcttgcacagt	52.9	12
6	HPV44	E4	125	143	tagtactgtgcaagacgta	tacgtcttgcacagtacta	52.85	34
7	HPV44	E4	128	146	tactgtgcaagacgtatcc	ggatacgtcttgcacagta	52.66	11
8	HPV44	E4	282	300	aacaccaacaacgccagaa	ttctggcgttgttggtgtt	52.08	32
9	HPV44	E4	74	92	atgggaggtatgtattggc	gccaatacatacctcccat	51.06	41
10	HPV44	E4	281	299	aaacaccaacaacgccaga	tctggcgttgttggtgttt	50.72	34
11	HPV44	E4	396	414	tattgtacagctacgcctg	caggcgtagctgtacaata	50.31	11
12	HPV70	E4	172	190	cagacggagtgttcgtgga	tccacgaacactccgtctg	54	40
13	HPV70	E4	171	189	acagacggagtgttcgtgg	ccacgaacactccgtctgt	50.73	30
14	HPV70	E4	173	191	agacggagtgttcgtggac	gtccacgaacactccgtct	50.72	37
15	HPV72	E4	56	74	tgttgaaactgttgggcga	tcgcccaacagtttcaaca	51.54	20
16	HPV11	E4	89	107	cattgctgaacctactaca	tgtagtaggttcagcaatg	54.71	48
17	HPV11	E4	67	85	ctagcactgtacgagaagt	acttctcgtacagtgctag	54.5	43
18	HPV11	E4	88	106	ccattgctgaacctactac	gtagtaggttcagcaatgg	54.42	48
19	HPV11	E4	308	326	cagtgcagctacgcctata	tataggcgtagctgcactg	54.06	17
20	HPV11	E4	95	113	tgaacctactacatacacc	ggtgtatgtagtaggttca	53.6	46
21	HPV11	E4	54	72	cctgcatctgtatctagca	tgctagatacagatgcagg	52.96	20
22	HPV11	E4	223	241	tggccaacatcagatccgt	acggatctgatgttggcca	51.98	33
23	HPV11	E4	307	325	acagtgcagctacgcctat	ataggcgtagctgcactgt	51.95	19
24	HPV11	E4	309	327	agtgcagctacgcctatag	ctataggcgtagctgcact	51.82	38
25	HPV11	E4	96	114	gaacctactacatacaccc	gggtgtatgtagtaggttc	50.62	43
26	HPV11	E4	18	36	tgggaagtatgttatggca	tgccataacatacttccca	50.25	47
27	HPV11	E4	72	90	actgtacgagaagtatcca	tggatacttctcgtacagt	50.18	47
28	HPV11	E4	64	82	tatctagcactgtacgaga	tctcgtacagtgctagata	50.08	9
29	HPV42	E4	150	168	ggaacagcatacaacgtgc	gcacgttgtatgctgttcc	56.03	25
30	HPV42	E4	104	122	gcacaccacaacgtccatt	aatggacgttgtggtgtgc	55.53	7
31	HPV42	E4	101	119	attgcacaccacaacgtcc	ggacgttgtggtgtgcaat	54.68	21
32	HPV42	E4	121	139	ttgacaaccaccacgcaga	tctgcgtggtggttgtcaa	54.21	26
33	HPV42	E4	99	117	ccattgcacaccacaacgt	acgttgtggtgtgcaatgg	53.91	12
34	HPV42	E4	145	163	cagacggaacagcatacaa	ttgtatgctgttccgtctg	53.35	42
35	HPV42	E4	153	171	acagcatacaacgtgccca	tgggcacgttgtatgctgt	53.1	41
36	HPV42	E4	9	27	cctgcacccatatctagca	tgctagatatgggtgcagg	52.64	20
37	HPV42	E4	100	118	cattgcacaccacaacgtc	gacgttgtggtgtgcaatg	52.52	15
38	HPV42	E4	102	120	ttgcacaccacaacgtcca	tggacgttgtggtgtgcaa	52.47	25
39	HPV42	E4	8	26	tcctgcacccatatctagc	gctagatatgggtgcagga	52.27	42
40	HPV42	E4	103	121	tgcacaccacaacgtccat	atggacgttgtggtgtgca	51.9	35
41	HPV42	E4	338	356	ctgtggaagtcaggctacg	cgtagcctgacttccacag	51.83	45
42	HPV42	E4	12	30	gcacccatatctagcacca	tggtgctagatatgggtgc	51.62	42
43	HPV42	E4	339	357	tgtggaagtcaggctacgc	gcgtagcctgacttccaca	51.57	21
44	HPV42	E4	3	21	gtttctcctgcacccatat	atatgggtgcaggagaaac	51.28	45
45	HPV42	E4	151	169	gaacagcatacaacgtgcc	ggcacgttgtatgctgttc	51.27	31
46	HPV42	E4	206	224	gtgtggacagtcgccatca	tgatggcgactgtccacac	51.17	28
47	HPV42	E4	30	48	acatccaccgacgcagaga	tctctgcgtcggtggatgt	50.99	40
48	HPV42	E4	340	358	gtggaagtcaggctacgcc	ggcgtagcctgacttccac	50.86	8
49	HPV42	E4	144	162	acagacggaacagcataca	tgtatgctgttccgtctgt	50.75	40
50	HPV42	E4	170	188	catccaaacctcaccgcca	tggcggtgaggtttggatg	50.11	47
51	HPV42	E4	264	282	actgcagacagaacacgca	tgcgtgttctgtctgcagt	50.42	19
52	HPV43	E4	325	343	gaagtcacactacgcctat	ataggcgtagtgtgacttc	56.13	19
53	HPV43	E4	324	342	ggaagtcacactacgccta	taggcgtagtgtgacttcc	55.68	11
54	HPV43	E4	282	300	gtgcctaagcatacggacc	ggtccgtatgcttaggcac	55.32	7
55	HPV43	E4	326	344	aagtcacactacgcctata	tataggcgtagtgtgactt	54.06	17
56	HPV43	E4	284	302	gcctaagcatacggaccac	gtggtccgtatgcttaggc	52.34	25
57	HPV43	E4	283	301	tgcctaagcatacggacca	tggtccgtatgcttaggca	52.28	13
58	HPV43	E4	327	345	agtcacactacgcctataa	ttataggcgtagtgtgact	51.8	38
59	HPV43	E4	81	99	gaagtatcctctgttgcgt	acgcaacagaggatacttc	50.86	14
60	HPV43	E4	303	321	caccctagagggcacaacc	ggttgtgccctctagggtg	50.83	48
61	HPV43	E4	54	72	cctgcatctgtatctagta	tactagatacagatgcagg	50.65	49
62	HPV43	E4	322	340	gtggaagtcacactacgcc	ggcgtagtgtgacttccac	50.6	9
63	HPV43	E4	323	341	tggaagtcacactacgcct	aggcgtagtgtgacttcca	50.58	22
64	HPV43	E4	132	150	gtcccagattccacgtgca	tgcacgtggaatctgggac	50.31	34
65	HPV43	E4	278	296	actcgtgcctaagcatacg	cgtatgcttaggcacgagt	50.12	40
66	HPV81	E4	8	26	atgcaactctgtatctagc	gctagatacagagttgcat	51.31	42
67	HPV81	E4	202	220	acactgcaccaccgaacat	atgttcggtggtgcagtgt	50.58	9
68	HPV81	E4	263	281	cagcacagaaacacggaac	gttccgtgtttctgtgctg	50.36	24
69	HPV81	E4	9	27	tgcaactctgtatctagca	tgctagatacagagttgca	50.17	20
70	HPV6	E4	145	163	gcaccaaggaagacgcagt	actgcgtcttccttggtgc	55.63	36
71	HPV6	E4	311	329	cagttcagctacgcctata	tataggcgtagctgaactg	53.16	17
72	HPV6	E4	54	72	cctgcatctgtatctagca	tgctagatacagatgcagg	52.96	20
73	HPV6	E4	72	90	actacacaagaagtatcca	tggatacttcttgtgtagt	52.77	47
74	HPV6	E4	310	328	acagttcagctacgcctat	ataggcgtagctgaactgt	51.88	19
75	HPV6	E4	309	327	aacagttcagctacgccta	taggcgtagctgaactgtt	51.52	11
76	HPV6	E4	285	303	cagcaccaaagacggaaca	tgttccgtctttggtgctg	51.3	13
77	HPV6	E4	270	288	actaacaatcacgaccagc	gctggtcgtgattgttagt	50.87	11
78	HPV6	E4	312	330	agttcagctacgcctatag	ctataggcgtagctgaact	50.69	38
79	HPV6	E4	307	325	gtaacagttcagctacgcc	ggcgtagctgaactgttac	50.67	8
80	HPV6	E4	283	301	accagcaccaaagacggaa	ttccgtctttggtgctggt	50.62	47
81	HPV6	E4	308	326	taacagttcagctacgcct	aggcgtagctgaactgtta	50.5	22
82	HPV6	E4	18	36	tgggaagtatgttatggca	tgccataacatacttccca	50.25	47
83	HPV6	E4	284	302	ccagcaccaaagacggaac	gttccgtctttggtgctgg	50.17	17
84	HPV6	E4	184	202	gagcacgaggagtccaaca	tgttggactcctcgtgctc	50.13	40
85	HPV54	E4	88	106	gacagtgggaggtgcgtat	atacgcacctcccactgtc	52.39	8
86	HPV54	E4	129	147	cctgcatctgtatctagta	tactagatacagatgcagg	50.65	49
87	HPV54	E4	336	354	aggcacatcagtgacgata	tatcgtcactgatgtgcct	50.5	14
88	HPV61	E4	242	260	tgaccagtggatcaacggt	accgttgatccactggtca	53.92	17