HPVomics

Predicted highly potential siRNAs (LR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV6	L1	1020	1038	atgtgcatccgtaactaca	tgtagttacggatgcacat	55.79	48
2	HPV6	L1	336	354	gggtgtaagtggacatcct	aggatgtccacttacaccc	55.46	44
3	HPV6	L1	566	584	gtgttatacaggatggcga	tcgccatcctgtataacac	55.32	32
4	HPV6	L1	70	88	gatgcttatgttactcgca	tgcgagtaacataagcatc	55.19	5
5	HPV6	L1	73	91	gcttatgttactcgcacca	tggtgcgagtaacataagc	54.56	12
6	HPV6	L1	820	838	aagggtagtggaaatcgca	tgcgatttccactaccctt	54.39	7
7	HPV6	L1	325	343	ccattaggtgtgggtgtaa	ttacacccacacctaatgg	54.31	34
8	HPV6	L1	264	282	cgatcccacaacacaacgt	acgttgtgttgtgggatcg	54.2	12
9	HPV6	L1	265	283	gatcccacaacacaacgtt	aacgttgtgttgtgggatc	53.76	15
10	HPV6	L1	1366	1384	cagtatcctttgggacgca	tgcgtcccaaaggatactg	53.75	21
11	HPV6	L1	507	525	acagtgtactaatacacct	aggtgtattagtacactgt	53.44	43
12	HPV6	L1	57	75	agttgttgccacggatgct	agcatccgtggcaacaact	53.43	46
13	HPV6	L1	696	714	aatggctgcagacccatat	atatgggtctgcagccatt	53.23	45
14	HPV6	L1	1294	1312	aagccagatccctataaga	tcttatagggatctggctt	53.1	43
15	HPV6	L1	72	90	tgcttatgttactcgcacc	ggtgcgagtaacataagca	53.07	23
16	HPV6	L1	268	286	cccacaacacaacgtttag	ctaaacgttgtgttgtggg	52.77	35
17	HPV6	L1	266	284	atcccacaacacaacgttt	aaacgttgtgttgtgggat	52.64	24
18	HPV6	L1	987	1005	ggtagataccacacgcagt	actgcgtgtggtatctacc	52.49	26
19	HPV6	L1	267	285	tcccacaacacaacgttta	taaacgttgtgttgtggga	52.44	26
20	HPV6	L1	269	287	ccacaacacaacgtttagt	actaaacgttgtgttgtgg	52.21	15
21	HPV6	L1	1014	1032	gacattatgtgcatccgta	tacggatgcacataatgtc	51.69	28
22	HPV6	L1	71	89	atgcttatgttactcgcac	gtgcgagtaacataagcat	51.46	8
23	HPV6	L1	794	812	aacctgtgcctgatacact	agtgtatcaggcacaggtt	51.33	45
24	HPV6	L1	1368	1386	gtatcctttgggacgcaag	cttgcgtcccaaaggatac	51.19	9
25	HPV6	L1	290	308	gggcatgcacaggcctaga	tctaggcctgtgcatgccc	51.08	48
26	HPV6	L1	988	1006	gtagataccacacgcagta	tactgcgtgtggtatctac	50.7	20
27	HPV6	L1	1067	1085	aagagtacatgcgtcatgt	acatgacgcatgtactctt	50.69	21
28	HPV6	L1	54	72	caaagttgttgccacggat	atccgtggcaacaactttg	50.6	41
29	HPV6	L1	105	123	tgccagcagttctagactt	aagtctagaactgctggca	50.57	47
30	HPV6	L1	577	595	gatggcgatatggttgaca	tgtcaaccatatcgccatc	50.33	28
31	HPV6	L1	241	259	gcattgcctgactcgtctc	gagacgagtcaggcaatgc	50.29	23
32	HPV6	L1	1290	1308	ggaaaagccagatccctat	atagggatctggcttttcc	50.28	48
33	HPV6	L1	384	402	ttcagggagtggtggtaac	gttaccaccactccctgaa	50.16	43
34	HPV6	L1	240	258	tgcattgcctgactcgtct	agacgagtcaggcaatgca	50.1	9
35	HPV42	L1	70	88	gatgagtatgtgcaacgca	tgcgttgcacatactcatc	60.4	15
36	HPV42	L1	73	91	gagtatgtgcaacgcacca	tggtgcgttgcacatactc	60.36	19
37	HPV42	L1	50	68	ttgctaccattgttagcac	gtgctaacaatggtagcaa	59.01	47
38	HPV42	L1	385	403	aactcatctgcctatggca	tgccataggcagatgagtt	56.65	49
39	HPV42	L1	51	69	tgctaccattgttagcaca	tgtgctaacaatggtagca	56.52	47
40	HPV42	L1	69	87	agatgagtatgtgcaacgc	gcgttgcacatactcatct	56.35	9
41	HPV42	L1	72	90	tgagtatgtgcaacgcacc	ggtgcgttgcacatactca	56	18
42	HPV42	L1	1404	1422	tatgcaggctggtgtacgt	acgtacaccagcctgcata	55.74	20
43	HPV42	L1	1405	1423	atgcaggctggtgtacgtg	cacgtacaccagcctgcat	55.52	28
44	HPV42	L1	71	89	atgagtatgtgcaacgcac	gtgcgttgcacatactcat	55.14	19
45	HPV42	L1	516	534	gtgcaatgcttctcgggta	tacccgagaagcattgcac	54.97	27
46	HPV42	L1	99	117	ttatcatgctggtagtgcc	ggcactaccagcatgataa	54.14	39
47	HPV42	L1	1408	1426	caggctggtgtacgtgcag	ctgcacgtacaccagcctg	54	30
48	HPV42	L1	1171	1189	catgcaatggatcctacgt	acgtaggatccattgcatg	53.93	13
49	HPV42	L1	701	719	gaatggctgcagaaccgta	tacggttctgcagccattc	53.88	9
50	HPV42	L1	1407	1425	gcaggctggtgtacgtgca	tgcacgtacaccagcctgc	53.85	17
51	HPV42	L1	991	1009	gttgtagacaccactcgta	tacgagtggtgtctacaac	53.31	15
52	HPV42	L1	703	721	atggctgcagaaccgtatg	catacggttctgcagccat	53.24	19
53	HPV42	L1	123	141	actgactataggacatcca	tggatgtcctatagtcagt	53.04	44
54	HPV42	L1	1403	1421	ttatgcaggctggtgtacg	cgtacaccagcctgcataa	52.59	39
55	HPV42	L1	990	1008	agttgtagacaccactcgt	acgagtggtgtctacaact	51.97	35
56	HPV42	L1	74	92	agtatgtgcaacgcaccag	ctggtgcgttgcacatact	51.24	26
57	HPV42	L1	503	521	gtaagggcactccgtgcaa	ttgcacggagtgcccttac	50.53	38
58	HPV42	L1	702	720	aatggctgcagaaccgtat	atacggttctgcagccatt	50.53	12
59	HPV42	L1	1409	1427	aggctggtgtacgtgcagg	cctgcacgtacaccagcct	50.48	42
60	HPV42	L1	788	806	gtactactggtgatagtgt	acactatcaccagtagtac	50.27	50
61	HPV42	L1	996	1014	agacaccactcgtagcact	agtgctacgagtggtgtct	50.27	45
62	HPV42	L1	994	1012	gtagacaccactcgtagca	tgctacgagtggtgtctac	50.24	18
63	HPV42	L1	187	205	gtttctggacatcaataca	tgtattgatgtccagaaac	50	50
64	HPV42	L1	587	605	atatggtggatgtagggtt	aaccctacatccaccatat	59.27	41
65	HPV42	L1	76	94	gaatatgtgcaacgcacca	tggtgcgttgcacatattc	58.92	19
66	HPV42	L1	73	91	gatgaatatgtgcaacgca	tgcgttgcacatattcatc	56.86	15
67	HPV42	L1	309	327	gctagaagtaggtcgtgga	tccacgacctacttctagc	54.54	47
68	HPV42	L1	585	603	ggatatggtggatgtaggg	ccctacatccaccatatcc	54.54	48
69	HPV42	L1	75	93	tgaatatgtgcaacgcacc	ggtgcgttgcacatattca	52.05	18
70	HPV42	L1	111	129	cagcagttctaggctattg	caatagcctagaactgctg	52.03	48
71	HPV42	L1	477	495	ctgtaaacctgccataggg	ccctatggcaggtttacag	51.81	48
72	HPV42	L1	700	718	atgtctgctgaggcctatg	cataggcctcagcagacat	51.81	31
73	HPV42	L1	476	494	gctgtaaacctgccatagg	cctatggcaggtttacagc	51.52	25
74	HPV42	L1	74	92	atgaatatgtgcaacgcac	gtgcgttgcacatattcat	50.78	19
75	HPV42	L1	328	346	cagcctttgggcgttggta	taccaacgcccaaaggctg	50.33	13
76	HPV42	L1	109	127	gccagcagttctaggctat	atagcctagaactgctggc	50.3	39
77	HPV42	L1	337	355	ggcgttggtattagtggcc	ggccactaataccaacgcc	50.12	40
78	HPV11	L1	1141	1159	gcagaagtcatggcctata	tataggccatgacttctgc	59.57	31
79	HPV11	L1	805	823	cctgatgacctgttggtaa	ttaccaacaggtcatcagg	56.29	47
80	HPV11	L1	865	883	gtacatacacctagtggct	agccactaggtgtatgtac	54.2	40
81	HPV11	L1	346	364	gggcatccattgctaaaca	tgtttagcaatggatgccc	53.31	44
82	HPV11	L1	73	91	gcgtatgttaaacgcacca	tggtgcgtttaacatacgc	53.21	19
83	HPV11	L1	54	72	caaggttgttgccacggat	atccgtggcaacaaccttg	52.69	41
84	HPV11	L1	990	1008	ggtagataccacacgcagt	actgcgtgtggtatctacc	52.49	26
85	HPV11	L1	1398	1416	gcaaagtggatatcgagga	tcctcgatatccactttgc	52.49	40
86	HPV11	L1	1140	1158	tgcagaagtcatggcctat	ataggccatgacttctgca	52.46	50
87	HPV11	L1	55	73	aaggttgttgccacggatg	catccgtggcaacaacctt	52.25	46
88	HPV11	L1	59	77	ttgttgccacggatgcgta	tacgcatccgtggcaacaa	52.21	26
89	HPV11	L1	58	76	gttgttgccacggatgcgt	acgcatccgtggcaacaac	52.18	32
90	HPV11	L1	993	1011	agataccacacgcagtaca	tgtactgcgtgtggtatct	52.05	42
91	HPV11	L1	468	486	gggctgtgctccaccgtta	taacggtggagcacagccc	51.98	18
92	HPV11	L1	837	855	cagatcatctgtagctagt	actagctacagatgatctg	51.66	37
93	HPV11	L1	836	854	acagatcatctgtagctag	ctagctacagatgatctgt	51.63	42
94	HPV11	L1	1069	1087	aaggaatacatgcgccatg	catggcgcatgtattcctt	51.06	27
95	HPV11	L1	1116	1134	tcaattgtgtagcattaca	tgtaatgctacacaattga	51.06	46
96	HPV11	L1	471	489	ctgtgctccaccgttaggt	acctaacggtggagcacag	51.01	27
97	HPV11	L1	70	88	gatgcgtatgttaaacgca	tgcgtttaacatacgcatc	50.98	9
98	HPV11	L1	1369	1387	cagtttccccttggacgta	tacgtccaaggggaaactg	50.94	28
99	HPV11	L1	467	485	tgggctgtgctccaccgtt	aacggtggagcacagccca	50.75	36
100	HPV11	L1	991	1009	gtagataccacacgcagta	tactgcgtgtggtatctac	50.7	20
101	HPV11	L1	329	347	taggcgttggtgttagtgg	ccactaacaccaacgccta	50.58	42
102	HPV11	L1	472	490	tgtgctccaccgttaggtg	cacctaacggtggagcaca	50.58	33
103	HPV11	L1	202	220	agagtgtttaaggtagtgt	acactaccttaaacactct	50.55	39
104	HPV11	L1	469	487	ggctgtgctccaccgttag	ctaacggtggagcacagcc	50.48	13
105	HPV11	L1	123	141	ccttgctgtgggacatcca	tggatgtcccacagcaagg	50.32	44
106	HPV11	L1	1402	1420	agtggatatcgaggacgga	tccgtcctcgatatccact	50.25	31
107	HPV11	L1	281	299	gtttagtatgggcgtgcac	gtgcacgcccatactaaac	50.06	35