HPVomics

A therapeutic and epitome resource for Human Papillomaviruses

Predicted highly potential siRNAs (LR-HPVs)

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S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV44	E5	2	20	tggaacacatacctataga	tctataggtatgtgttcca	60.56	46
2	HPV44	E5	22	40	gctactataggggcaacca	tggttgcccctatagtagc	53.97	49
3	HPV44	E5	18	36	agatgctactataggggca	tgcccctatagtagcatct	53.06	47
4	HPV44	E5	65	83	ttgccctgtttgtatgctt	aagcatacaaacagggcaa	51.14	50
5	HPV70	E5	68	86	tatgttgcagtgtcccgct	agcgggacactgcaacata	56.13	21
6	HPV70	E5	69	87	atgttgcagtgtcccgctt	aagcgggacactgcaacat	54.5	43
7	HPV70	E5	67	85	atatgttgcagtgtcccgc	gcgggacactgcaacatat	53.1	32
8	HPV70	E5	71	89	gttgcagtgtcccgctttt	aaaagcgggacactgcaac	50.86	28
9	HPV70	E5	70	88	tgttgcagtgtcccgcttt	aaagcgggacactgcaaca	50.14	22
10	HPV72	E5	7	25	cctgttgtagtgggcaata	tattgcccactacaacagg	59.27	49
11	HPV72	E5	11	29	ttgtagtgggcaatacgga	tccgtattgcccactacaa	54.86	13
12	HPV72	E5	3	21	gtatcctgttgtagtgggc	gcccactacaacaggatac	54.02	44
13	HPV72	E5	13	31	gtagtgggcaatacggatg	catccgtattgcccactac	53.93	16
14	HPV72	E5	10	28	gttgtagtgggcaatacgg	ccgtattgcccactacaac	53	3
15	HPV72	E5	12	30	tgtagtgggcaatacggat	atccgtattgcccactaca	52.52	5
16	HPV11	E5	130	148	acatctgtgctggtactaa	ttagtaccagcacagatgt	56.16	36
17	HPV11	E5	132	150	atctgtgctggtactaaca	tgttagtaccagcacagat	54.68	45
18	HPV11	E5	254	272	acattgtgcaaacgcaaca	tgttgcgtttgcacaatgt	51.43	8
19	HPV11	E5	251	269	tatacattgtgcaaacgca	tgcgtttgcacaatgtata	51.29	33
20	HPV11	E5	252	270	atacattgtgcaaacgcaa	ttgcgtttgcacaatgtat	50.44	23
21	HPV42	E5	2	20	tgttgacctgtcaattgga	tccaattgacaggtcaaca	55.84	43
22	HPV81	E5	12	30	tatggtccgcacccatact	agtatgggtgcggaccata	51.52	32
23	HPV81	E5	8	26	ctgttatggtccgcaccca	tgggtgcggaccataacag	50.35	33
24	HPV81	E5	11	29	ttatggtccgcacccatac	gtatgggtgcggaccataa	50.01	45
25	HPV6	E5	128	146	acacatctgtgctagtact	agtactagcacagatgtgt	52.43	24
26	HPV6	E5	222	240	gtgttactgtcccgcattg	caatgcgggacagtaacac	52.31	9
27	HPV6	E5	129	147	cacatctgtgctagtacta	tagtactagcacagatgtg	51.3	41
28	HPV6	E5	132	150	atctgtgctagtactaaca	tgttagtactagcacagat	50.29	45
29	HPV61	E5	51	69	ggatcagcaaaactgcgga	tccgcagttttgctgatcc	52.34	37
30	HPV61	E5	100	118	attgcaatactgttgtaca	tgtacaacagtattgcaat	51.29	49
31	HPV61	E5	26	44	ctcaggggtttgcattact	agtaatgcaaacccctgag	50.56	46