HPVomics

Predicted highly potential siRNAs (HR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV16	E6	32	50	acccacaggagcgacccag	ctgggtcgctcctgtgggt	52.71	12
2	HPV16	E6	74	92	agctgcaaacaactataca	tgtatagttgtttgcagct	61.14	35
3	HPV16	E6	75	93	gctgcaaacaactatacat	atgtatagttgtttgcagc	75.67	46
4	HPV16	E6	120	138	caagcaacagttactgcga	tcgcagtaactgttgcttg	79.99	15
5	HPV16	E6	121	139	aagcaacagttactgcgac	gtcgcagtaactgttgctt	57.25	19
6	HPV16	E6	122	140	agcaacagttactgcgacg	cgtcgcagtaactgttgct	55.56	19
7	HPV16	E6	123	141	gcaacagttactgcgacgt	acgtcgcagtaactgttgc	80.04	5
8	HPV16	E6	124	142	caacagttactgcgacgtg	cacgtcgcagtaactgttg	77.79	5
9	HPV16	E6	125	143	aacagttactgcgacgtga	tcacgtcgcagtaactgtt	76.1	11
10	HPV16	E6	126	144	acagttactgcgacgtgag	ctcacgtcgcagtaactgt	56.98	23
11	HPV16	E6	127	145	cagttactgcgacgtgagg	cctcacgtcgcagtaactg	56.28	47
12	HPV16	E6	128	146	agttactgcgacgtgaggt	acctcacgtcgcagtaact	55.7	35
13	HPV16	E6	131	149	tactgcgacgtgaggtata	tatacctcacgtcgcagta	61.4	43
14	HPV16	E6	149	167	atgactttgcttttcggga	tcccgaaaagcaaagtcat	57.39	16
15	HPV16	E6	150	168	tgactttgcttttcgggat	atcccgaaaagcaaagtca	57.12	12
16	HPV16	E6	151	169	gactttgcttttcgggatt	aatcccgaaaagcaaagtc	80.86	12
17	HPV16	E6	289	307	cagcaatacaacaaaccgt	acggtttgttgtattgctg	53.42	15
18	HPV16	E6	292	310	caatacaacaaaccgttgt	acaacggtttgttgtattg	75.21	17
19	HPV16	E6	408	426	gggtcggtggaccggtcga	tcgaccggtccaccgaccc	54.66	14
20	HPV16	E6	409	427	ggtcggtggaccggtcgat	atcgaccggtccaccgacc	73.1	3
21	HPV16	E6	410	428	gtcggtggaccggtcgatg	catcgaccggtccaccgac	56.64	0
22	HPV16	E6	411	429	tcggtggaccggtcgatgt	acatcgaccggtccaccga	68.61	4
23	HPV16	E6	412	430	cggtggaccggtcgatgta	tacatcgaccggtccaccg	75.13	22
24	HPV16	E6	413	431	ggtggaccggtcgatgtat	atacatcgaccggtccacc	63.16	14
25	HPV16	E6	417	435	gaccggtcgatgtatgtct	agacatacatcgaccggtc	59.57	50
26	HPV16	E6	441	459	cagatcatcaagaacacgt	acgtgttcttgatgatctg	76.6	26
27	HPV16	E6	442	460	agatcatcaagaacacgta	tacgtgttcttgatgatct	58.84	29
28	HPV16	E6	443	461	gatcatcaagaacacgtag	ctacgtgttcttgatgatc	57.85	9
29	HPV16	E6	444	462	atcatcaagaacacgtaga	tctacgtgttcttgatgat	76.95	11
30	HPV16	E6	445	463	tcatcaagaacacgtagag	ctctacgtgttcttgatga	50.74	13
31	HPV16	E6	446	464	catcaagaacacgtagaga	tctctacgtgttcttgatg	79.87	8
32	HPV18	E6	27	45	gcgaccctacaagctacct	aggtagcttgtagggtcgc	50.25	47
33	HPV18	E6	40	58	ctacctgatctgtgcacgg	ccgtgcacagatcaggtag	53.69	19
34	HPV18	E6	42	60	acctgatctgtgcacggaa	ttccgtgcacagatcaggt	53.01	28
35	HPV18	E6	101	119	attgcaagacagtattgga	tccaatactgtcttgcaat	55.04	41
36	HPV18	E6	167	185	atagagacagtataccgca	tgcggtatactgtctctat	54.15	4
37	HPV18	E6	169	187	agagacagtataccgcatg	catgcggtatactgtctct	53.32	25
38	HPV18	E6	170	188	gagacagtataccgcatgc	gcatgcggtatactgtctc	51.79	22
39	HPV18	E6	171	189	agacagtataccgcatgct	agcatgcggtatactgtct	52.54	20
40	HPV18	E6	279	297	aactaacactgggttatac	gtataacccagtgttagtt	52.83	49
41	HPV18	E6	280	298	actaacactgggttataca	tgtataacccagtgttagt	54.01	40
42	HPV18	E6	321	339	gtgccagaaaccgttgaat	attcaacggtttctggcac	52.32	27
43	HPV18	E6	385	403	aacatagctgggcactata	tatagtgcccagctatgtt	53.98	42
44	HPV26	E6	10	28	gatcctagagaacgaccca	tgggtcgttctctaggatc	52.36	9
45	HPV26	E6	11	29	atcctagagaacgacccag	ctgggtcgttctctaggat	51.5	12
46	HPV26	E6	21	39	acgacccagaacgctacat	atgtagcgttctgggtcgt	50.96	22
47	HPV26	E6	95	113	attgcaaggaaaccttaca	tgtaaggtttccttgcaat	57.57	50
48	HPV26	E6	163	181	agagataggagtccgtatg	catacggactcctatctct	50.15	11
49	HPV26	E6	164	182	gagataggagtccgtatgc	gcatacggactcctatctc	50.01	8
50	HPV26	E6	218	236	taacagagtatagacgcta	tagcgtctatactctgtta	50.02	48
51	HPV26	E6	220	238	acagagtatagacgctata	tatagcgtctatactctgt	50.31	8
52	HPV26	E6	351	369	aattgtggatgaaaagcga	tcgcttttcatccacaatt	53.15	35
53	HPV26	E6	352	370	attgtggatgaaaagcgac	gtcgcttttcatccacaat	50.49	30
54	HPV26	E6	354	372	tgtggatgaaaagcgacga	tcgtcgcttttcatccaca	50.64	20
55	HPV26	E6	357	375	ggatgaaaagcgacgattt	aaatcgtcgcttttcatcc	50.13	8
56	HPV31	E6	33	51	attgcatgaactaagctcg	cgagcttagttcatgcaat	50.27	47
57	HPV31	E6	36	54	gcatgaactaagctcggca	tgccgagcttagttcatgc	55.41	42
58	HPV31	E6	37	55	catgaactaagctcggcat	atgccgagcttagttcatg	50.3	22
59	HPV31	E6	49	67	tcggcattggaaataccct	agggtatttccaatgccga	55.74	44
60	HPV31	E6	50	68	cggcattggaaatacccta	tagggtatttccaatgccg	60.07	28
61	HPV31	E6	52	70	gcattggaaataccctacg	cgtagggtatttccaatgc	54.61	44
62	HPV31	E6	53	71	cattggaaataccctacga	tcgtagggtatttccaatg	53.75	14
63	HPV31	E6	56	74	tggaaataccctacgatga	tcatcgtagggtatttcca	50.76	20
64	HPV31	E6	57	75	ggaaataccctacgatgaa	ttcatcgtagggtatttcc	50.22	30
65	HPV31	E6	370	388	cgattccacaacataggag	ctcctatgttgtggaatcg	51.58	50
66	HPV31	E6	414	432	atgttggagaagacctcgt	acgaggtcttctccaacat	55.5	28
67	HPV31	E6	415	433	tgttggagaagacctcgta	tacgaggtcttctccaaca	55.51	30
68	HPV31	E6	416	434	gttggagaagacctcgtac	gtacgaggtcttctccaac	50.55	6
69	HPV31	E6	419	437	ggagaagacctcgtactga	tcagtacgaggtcttctcc	52.22	15
70	HPV33	E6	53	71	cattggagacaactataca	tgtatagttgtctccaatg	58.6	35
71	HPV33	E6	54	72	attggagacaactatacac	gtgtatagttgtctccaat	54.74	46
72	HPV33	E6	74	92	acattgaactacagtgcgt	acgcactgtagttcaatgt	52.69	35
73	HPV33	E6	75	93	cattgaactacagtgcgtg	cacgcactgtagttcaatg	52.01	9
74	HPV33	E6	78	96	tgaactacagtgcgtggaa	ttccacgcactgtagttca	56.28	23
75	HPV33	E6	79	97	gaactacagtgcgtggaat	attccacgcactgtagttc	53.23	36
76	HPV35	E6	10	28	gacccagctgaacgacctt	aaggtcgttcagctgggtc	51.03	30
77	HPV35	E6	11	29	acccagctgaacgacctta	taaggtcgttcagctgggt	52.03	22
78	HPV35	E6	13	31	ccagctgaacgaccttaca	tgtaaggtcgttcagctgg	57.33	50
79	HPV35	E6	36	54	gcatgatttgtgcaacgag	ctcgttgcacaaatcatgc	54.93	7
80	HPV35	E6	37	55	catgatttgtgcaacgagg	cctcgttgcacaaatcatg	50.25	20
81	HPV35	E6	39	57	tgatttgtgcaacgaggta	tacctcgttgcacaaatca	51.59	30
82	HPV35	E6	104	122	aagaattacagcggagtga	tcactccgctgtaattctt	51.07	27
83	HPV35	E6	172	190	cagccatatggagtatgca	tgcatactccatatggctg	59	45
84	HPV35	E6	245	263	gtgtgtatggagaaacgtt	aacgtttctccatacacac	54.1	28
85	HPV35	E6	391	409	cggtggacaggtcggtgta	tacaccgacctgtccaccg	52.1	29
86	HPV35	E6	392	410	ggtggacaggtcggtgtat	atacaccgacctgtccacc	53.07	6
87	HPV35	E6	396	414	gacaggtcggtgtatgtcc	ggacatacaccgacctgtc	54.47	50
88	HPV35	E6	417	435	ttggaaaccaacacgtaga	tctacgtgttggtttccaa	55.33	11
89	HPV35	E6	419	437	ggaaaccaacacgtagaga	tctctacgtgttggtttcc	51.79	8
90	HPV39	E6	19	37	cctgcagaacggccataca	tgtatggccgttctgcagg	52.43	19
91	HPV39	E6	44	62	cagacctgtgcacaacgct	agcgttgtgcacaggtctg	50.38	14
92	HPV39	E6	75	93	gcaggacattacaatagcc	ggctattgtaatgtcctgc	51.28	38
93	HPV39	E6	87	105	aatagcctgtgtctattgc	gcaatagacacaggctatt	50.17	43
94	HPV39	E6	93	111	ctgtgtctattgcagacga	tcgtctgcaatagacacag	58.15	21
95	HPV39	E6	94	112	tgtgtctattgcagacgac	gtcgtctgcaatagacaca	53.83	17
96	HPV39	E6	95	113	gtgtctattgcagacgacc	ggtcgtctgcaatagacac	58.98	10
97	HPV39	E6	96	114	tgtctattgcagacgacca	tggtcgtctgcaatagaca	52.91	20
98	HPV39	E6	97	115	gtctattgcagacgaccac	gtggtcgtctgcaatagac	52.82	15
99	HPV39	E6	98	116	tctattgcagacgaccact	agtggtcgtctgcaataga	53.02	12
100	HPV39	E6	101	119	attgcagacgaccactaca	tgtagtggtcgtctgcaat	58.22	45
101	HPV39	E6	110	128	gaccactacagcaaaccga	tcggtttgctgtagtggtc	56.29	15
102	HPV39	E6	111	129	accactacagcaaaccgag	ctcggtttgctgtagtggt	52.04	36
103	HPV39	E6	248	266	actcggtgtatgcaactac	gtagttgcatacaccgagt	57.02	39
104	HPV39	E6	318	336	gtgttgtctgaaaccgctg	cagcggtttcagacaacac	51.17	21
105	HPV39	E6	444	462	ccgcagactaacacgaaga	tcttcgtgttagtctgcgg	51.07	42
106	HPV39	E6	446	464	gcagactaacacgaagaga	tctcttcgtgttagtctgc	50.68	26
107	HPV45	E6	27	45	acgaccctacaagctacca	tggtagcttgtagggtcgt	50.47	47
108	HPV45	E6	65	83	atacatcactacaagacgt	acgtcttgtagtgatgtat	50.91	38
109	HPV45	E6	67	85	acatcactacaagacgtat	atacgtcttgtagtgatgt	50.47	15
110	HPV45	E6	68	86	catcactacaagacgtatc	gatacgtcttgtagtgatg	50.62	5
111	HPV45	E6	106	124	aaagcaacattggaacgca	tgcgttccaatgttgcttt	52.82	31
112	HPV45	E6	107	125	aagcaacattggaacgcac	gtgcgttccaatgttgctt	51.12	24
113	HPV45	E6	108	126	agcaacattggaacgcaca	tgtgcgttccaatgttgct	57.66	18
114	HPV45	E6	109	127	gcaacattggaacgcacag	ctgtgcgttccaatgttgc	54.97	30
115	HPV45	E6	110	128	caacattggaacgcacaga	tctgtgcgttccaatgttg	58.13	49
116	HPV45	E6	357	375	acaccttaaggacaaacga	tcgtttgtccttaaggtgt	54.17	26
117	HPV45	E6	375	393	aagatttcacagcatagct	agctatgctgtgaaatctt	52.7	46
118	HPV45	E6	402	420	ccgagggcagtgtaataca	tgtattacactgccctcgg	52.11	44
119	HPV51	E6	242	260	ggtctgtgtatggtactac	gtagtaccatacacagacc	51.23	36
120	HPV51	E6	372	390	gttccatgaaatagcggga	tcccgctatttcatggaac	50.04	11
121	HPV51	E6	409	427	gctaattgctggcaacgta	tacgttgccagcaattagc	53.46	25
122	HPV51	E6	410	428	ctaattgctggcaacgtac	gtacgttgccagcaattag	52.14	10
123	HPV52	E6	6	24	tgaggatccagcaacacga	tcgtgttgctggatcctca	54.74	17
124	HPV52	E6	50	68	aggtgctggaagaatcggt	accgattcttccagcacct	53.43	8
125	HPV52	E6	51	69	ggtgctggaagaatcggtg	caccgattcttccagcacc	54.45	8
126	HPV52	E6	52	70	gtgctggaagaatcggtgc	gcaccgattcttccagcac	52.94	23
127	HPV52	E6	53	71	tgctggaagaatcggtgca	tgcaccgattcttccagca	51.94	31
128	HPV52	E6	54	72	gctggaagaatcggtgcat	atgcaccgattcttccagc	52.41	25
129	HPV52	E6	359	377	atgcaaacaagcgatttca	tgaaatcgcttgtttgcat	52.33	24
130	HPV52	E6	392	410	gttggacagggcgctgttc	gaacagcgccctgtccaac	50.55	29
131	HPV53	E6	27	45	agaagagcgaccacgtaca	tgtacgtggtcgctcttct	50.6	17
132	HPV53	E6	114	132	gaaggcattgacagcgtca	tgacgctgtcaatgccttc	51.76	36
133	HPV53	E6	164	182	gagtagtgtatagagacgg	ccgtctctatacactactc	52.17	47
134	HPV53	E6	167	185	tagtgtatagagacgggta	tacccgtctctatacacta	51.65	17
135	HPV53	E6	168	186	agtgtatagagacgggtat	atacccgtctctatacact	51.43	17
136	HPV53	E6	169	187	gtgtatagagacgggtatc	gatacccgtctctatacac	51.6	11
137	HPV53	E6	249	267	caattgttcagtgtacggg	cccgtacactgaacaattg	50.56	17
138	HPV53	E6	250	268	aattgttcagtgtacgggg	ccccgtacactgaacaatt	51.05	5
139	HPV53	E6	251	269	attgttcagtgtacggggc	gccccgtacactgaacaat	50.49	12
140	HPV53	E6	272	290	gcctggaagcactaactaa	ttagttagtgcttccaggc	51.9	43
141	HPV53	E6	323	341	acagatgtcaacatccgtt	aacggatgttgacatctgt	52.01	28
142	HPV53	E6	397	415	tcacatatgtggaccgggt	acccggtccacatatgtga	50.22	28
143	HPV53	E6	399	417	acatatgtggaccgggtcg	cgacccggtccacatatgt	51.24	34
144	HPV53	E6	401	419	atatgtggaccgggtcgtg	cacgacccggtccacatat	53.76	9
145	HPV53	E6	402	420	tatgtggaccgggtcgtgc	gcacgacccggtccacata	51.73	29
146	HPV56	E6	254	272	cagtgtatggagctacact	agtgtagctccatacactg	62.15	36
147	HPV56	E6	256	274	gtgtatggagctacactag	ctagtgtagctccatacac	56.68	49
148	HPV58	E6	41	59	atttgtgtcaggcgttgga	tccaacgcctgacacaaat	52.9	22
149	HPV59	E6	12	30	tgaggatcctacacaacga	tcgttgtgtaggatcctca	55.1	12
150	HPV59	E6	14	32	aggatcctacacaacgacc	ggtcgttgtgtaggatcct	51.45	10
151	HPV59	E6	15	33	ggatcctacacaacgacca	tggtcgttgtgtaggatcc	56.8	15
152	HPV59	E6	16	34	gatcctacacaacgaccat	atggtcgttgtgtaggatc	56.62	15
153	HPV59	E6	17	35	atcctacacaacgaccata	tatggtcgttgtgtaggat	56.24	10
154	HPV59	E6	18	36	tcctacacaacgaccatac	gtatggtcgttgtgtagga	52.49	45
155	HPV59	E6	42	60	gcctgatttgagcacaaca	tgttgtgctcaaatcaggc	60.25	48
156	HPV59	E6	165	183	gtatagagactgtacaccg	cggtgtacagtctctatac	50.68	34
157	HPV59	E6	167	185	atagagactgtacaccgta	tacggtgtacagtctctat	53.88	19
158	HPV59	E6	170	188	gagactgtacaccgtatgc	gcatacggtgtacagtctc	51.52	8
159	HPV59	E6	171	189	agactgtacaccgtatgca	tgcatacggtgtacagtct	51.76	6
160	HPV59	E6	303	321	gctgatacgctgttataga	tctataacagcgtatcagc	50.5	45
161	HPV59	E6	438	456	acacctaagacagcaacga	tcgttgctgtcttaggtgt	54.05	33
162	HPV66	E6	17	35	gcaatacacaggaacgtcc	ggacgttcctgtgtattgc	50.53	30
163	HPV66	E6	18	36	caatacacaggaacgtcca	tggacgttcctgtgtattg	53.79	25
164	HPV66	E6	184	202	ccatatgcagtatgtaggg	ccctacatactgcatatgg	53.26	48
165	HPV66	E6	190	208	gcagtatgtagggtatgtt	aacataccctacatactgc	50.76	41
166	HPV66	E6	311	329	taaggtgctaccgatgtca	tgacatcggtagcacctta	54.23	8
167	HPV66	E6	315	333	gtgctaccgatgtcaatgt	acattgacatcggtagcac	53.34	44
168	HPV66	E6	394	412	gcatatgcatggaccgggt	acccggtccatgcatatgc	51.81	28
169	HPV66	E6	396	414	atatgcatggaccgggtca	tgacccggtccatgcatat	53.09	34
170	HPV66	E6	420	438	gcagtgttggagacatacg	cgtatgtctccaacactgc	56.61	49
171	HPV66	E6	421	439	cagtgttggagacatacga	tcgtatgtctccaacactg	58.58	16
172	HPV66	E6	422	440	agtgttggagacatacgag	ctcgtatgtctccaacact	50.26	7
173	HPV66	E6	423	441	gtgttggagacatacgagt	actcgtatgtctccaacac	56.88	9
174	HPV66	E6	426	444	ttggagacatacgagtaga	tctactcgtatgtctccaa	54.55	36
175	HPV66	E6	428	446	ggagacatacgagtagaca	tgtctactcgtatgtctcc	50.52	40
176	HPV68	E6	66	84	cactacattgcatgacgtt	aacgtcatgcaatgtagtg	50.05	7
177	HPV68	E6	100	118	tattgcagaaggcaactac	gtagttgccttctgcaata	54.89	39
178	HPV68	E6	158	176	gtgtagtgtatagagacgg	ccgtctctatacactacac	52.06	47
179	HPV68	E6	161	179	tagtgtatagagacggggt	accccgtctctatacacta	51.88	46
180	HPV68	E6	162	180	agtgtatagagacggggta	taccccgtctctatacact	51.31	29
181	HPV68	E6	248	266	aatcggtgtatgcaactac	gtagttgcatacaccgatt	51.69	39
182	HPV68	E6	446	464	gcagacgcatacgtcaaga	tcttgacgtatgcgtctgc	53.72	19
183	HPV73	E6	12	30	caattcagaagaacgacca	tggtcgttcttctgaattg	51.49	15
184	HPV73	E6	14	32	attcagaagaacgaccata	tatggtcgttcttctgaat	54.38	10
185	HPV73	E6	43	61	gcgttatgtgacgaagtga	tcacttcgtcacataacgc	50.17	18
186	HPV73	E6	95	113	tgttttgccaacgtggact	agtccacgttggcaaaaca	50	44
187	HPV73	E6	176	194	aaccatatggtgtatgtca	tgacatacaccatatggtt	54.42	50
188	HPV73	E6	180	198	atatggtgtatgtcaaccg	cggttgacatacaccatat	50.59	34
189	HPV73	E6	182	200	atggtgtatgtcaaccgtg	cacggttgacatacaccat	52.13	10
190	HPV73	E6	183	201	tggtgtatgtcaaccgtgt	acacggttgacatacacca	50.77	17
191	HPV73	E6	184	202	ggtgtatgtcaaccgtgtt	aacacggttgacatacacc	52.06	36
192	HPV73	E6	247	265	tcagtatatggcactacgt	acgtagtgccatatactga	50.1	9
193	HPV73	E6	248	266	cagtatatggcactacgtt	aacgtagtgccatatactg	50	9
194	HPV82	E6	46	64	tgtgaagcctgcaatacgt	acgtattgcaggcttcaca	52.43	3
195	HPV82	E6	47	65	gtgaagcctgcaatacgtc	gacgtattgcaggcttcac	52.17	22
196	HPV82	E6	49	67	gaagcctgcaatacgtcta	tagacgtattgcaggcttc	52.31	16
197	HPV82	E6	50	68	aagcctgcaatacgtctat	atagacgtattgcaggctt	51	21