HPVomics

A therapeutic and epitome resource for Human Papillomaviruses

Predicted highly potential siRNAs (HR-HPVs)

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S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV66	E4	192	210	gtacatatggaaaccgaga	tctcggtttccatatgtac	55.93	30
2	HPV66	E4	435	453	gacatcagtaacaacgcca	tggcgttgttactgatgtc	53.84	26
3	HPV66	E4	399	417	agagagtcctacgcacact	agtgtgcgtaggactctct	53.38	26
4	HPV66	E4	452	470	caacagtagaagtccacgt	acgtggacttctactgttg	52.64	28
5	HPV66	E4	397	415	ccagagagtcctacgcaca	tgtgcgtaggactctctgg	52.42	9
6	HPV66	E4	224	242	tgactctgtgtctagtacc	ggtactagacacagagtca	51.62	24
7	HPV66	E4	225	243	gactctgtgtctagtacct	aggtactagacacagagtc	50.7	29
8	HPV66	E4	267	285	gagactgttaacgaataca	tgtattcgttaacagtctc	50.67	7
9	HPV66	E4	238	256	gtacctgtagatacaacgt	acgttgtatctacaggtac	50.44	15
10	HPV66	E4	263	281	tgttgagactgttaacgaa	ttcgttaacagtctcaaca	50.38	6
11	HPV66	E4	436	454	acatcagtaacaacgccaa	ttggcgttgttactgatgt	50.3	26
12	HPV66	E4	264	282	gttgagactgttaacgaat	attcgttaacagtctcaac	50.11	6
13	HPV73	E4	21	39	agcgcctgtgaagtatcca	tggatacttcacaggcgct	52.16	47
14	HPV73	E4	5	23	ttgtgctcctgtatctagc	gctagatacaggagcacaa	52.07	42
15	HPV73	E4	162	180	ctggattgtttgcataacc	ggttatgcaaacaatccag	52.07	35
16	HPV73	E4	7	25	gtgctcctgtatctagcgc	gcgctagatacaggagcac	51.35	12
17	HPV73	E4	133	151	aaagacagtgtgactcgga	tccgagtcacactgtcttt	50.7	21
18	HPV73	E4	6	24	tgtgctcctgtatctagcg	cgctagatacaggagcaca	50.6	20
19	HPV58	E4	135	153	gacaacacccagtactcca	tggagtactgggtgttgtc	56.59	38
20	HPV58	E4	146	164	gtactccacaaagtataca	tgtatactttgtggagtac	50.43	44
21	HPV58	E4	72	90	gccaccaacaacgaaagta	tactttcgttgttggtggc	50.38	9
22	HPV58	E4	231	249	gggcggaacgtgtgtagtt	aactacacacgttccgccc	50.17	46
23	HPV16	E4	25	43	gcagcaacgaagtatcctc	gaggatacttcgttgctgc	55.77	50
24	HPV16	E4	270	288	agtaacactacacccatag	ctatgggtgtagtgttact	53.73	45
25	HPV16	E4	267	285	aatagtaacactacaccca	tgggtgtagtgttactatt	53.41	35
26	HPV16	E4	16	34	ctgtgtttagcagcaacga	tcgttgctgctaaacacag	52.84	33
27	HPV16	E4	122	140	aacacagacgactatccag	ctggatagtcgtctgtgtt	52.75	44
28	HPV16	E4	18	36	gtgtttagcagcaacgaag	cttcgttgctgctaaacac	51.85	20
29	HPV16	E4	121	139	aaacacagacgactatcca	tggatagtcgtctgtgttt	51.13	28
30	HPV16	E4	129	147	acgactatccagcgaccaa	ttggtcgctggatagtcgt	50.86	13
31	HPV16	E4	17	35	tgtgtttagcagcaacgaa	ttcgttgctgctaaacaca	50.34	7
32	HPV31	E4	283	301	tcagttgtcctgcaactac	gtagttgcaggacaactga	54.61	39
33	HPV31	E4	16	34	ctgtatttagcagtgacga	tcgtcactgctaaatacag	52.55	19
34	HPV31	E4	50	68	gattgttacaaagctacca	tggtagctttgtaacaatc	50.89	47
35	HPV31	E4	275	293	aagggctgtcagttgtcct	aggacaactgacagccctt	50.75	39
36	HPV31	E4	75	93	aacaacaccaccacatcga	tcgatgtggtggtgttgtt	50.35	28
37	HPV31	E4	231	249	gtcaactgtggggttatca	tgataaccccacagttgac	50.31	47
38	HPV33	E4	176	194	caatagaacagcacgtact	agtacgtgctgttctattg	61.27	17
39	HPV33	E4	174	192	gacaatagaacagcacgta	tacgtgctgttctattgtc	56.23	24
40	HPV33	E4	184	202	cagcacgtactgcaactaa	ttagttgcagtacgtgctg	55.34	39
41	HPV33	E4	173	191	ggacaatagaacagcacgt	acgtgctgttctattgtcc	54.55	44
42	HPV33	E4	175	193	acaatagaacagcacgtac	gtacgtgctgttctattgt	53.89	5
43	HPV33	E4	178	196	atagaacagcacgtactgc	gcagtacgtgctgttctat	52.42	15
44	HPV33	E4	216	234	cagcggactgtgtgtagtt	aactacacacagtccgctg	51.77	46
45	HPV33	E4	208	226	caaacaagcagcggactgt	acagtccgctgcttgtttg	51.09	18
46	HPV33	E4	83	101	accacaagcagcggccaaa	tttggccgctgcttgtggt	50.79	26
47	HPV33	E4	227	245	gtgtagttctaacgttgca	tgcaacgttagaactacac	50.28	30
48	HPV33	E4	218	236	gcggactgtgtgtagttct	agaactacacacagtccgc	50.15	48
49	HPV51	E4	241	259	gtgcaactcagactgcgtt	aacgcagtctgagttgcac	55.32	19
50	HPV51	E4	232	250	ggcaccaaagtgcaactca	tgagttgcactttggtgcc	53.6	42
51	HPV51	E4	243	261	gcaactcagactgcgttta	taaacgcagtctgagttgc	52.53	22
52	HPV51	E4	54	72	ctatcaaacaccccaacga	tcgttggggtgtttgatag	52.24	24
53	HPV51	E4	244	262	caactcagactgcgtttat	ataaacgcagtctgagttg	52.02	19
54	HPV51	E4	56	74	atcaaacaccccaacgacc	ggtcgttggggtgtttgat	50.75	10
55	HPV51	E4	57	75	tcaaacaccccaacgacca	tggtcgttggggtgtttga	50.69	15
56	HPV51	E4	242	260	tgcaactcagactgcgttt	aaacgcagtctgagttgca	50.47	35
57	HPV51	E4	55	73	tatcaaacaccccaacgac	gtcgttggggtgtttgata	50.34	16
58	HPV39	E4	11	29	tgactctatgtgcagtacc	ggtactgcacatagagtca	59.12	42
59	HPV39	E4	243	261	aacacaagacggtacctca	tgaggtaccgtcttgtgtt	56.42	27
60	HPV39	E4	257	275	cctcagttgtggtaacact	agtgttaccacaactgagg	55.56	47
61	HPV39	E4	254	272	gtacctcagttgtggtaac	gttaccacaactgaggtac	54.62	43
62	HPV39	E4	86	104	gacccattccaccgcaaca	tgttgcggtggaatgggtc	53.62	17
63	HPV39	E4	239	257	ccacaacacaagacggtac	gtaccgtcttgtgttgtgg	53.02	3
64	HPV39	E4	238	256	gccacaacacaagacggta	taccgtcttgtgttgtggc	52.95	27
65	HPV39	E4	265	283	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
66	HPV39	E4	241	259	acaacacaagacggtacct	aggtaccgtcttgtgttgt	52.21	23
67	HPV39	E4	69	87	ttatcaaacaccaccgcga	tcgcggtggtgtttgataa	52.03	20
68	HPV39	E4	87	105	acccattccaccgcaacaa	ttgttgcggtggaatgggt	50.81	11
69	HPV39	E4	266	284	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
70	HPV39	E4	20	38	gtgcagtaccagtgacgga	tccgtcactggtactgcac	50.49	19
71	HPV39	E4	240	258	cacaacacaagacggtacc	ggtaccgtcttgtgttgtg	50.43	10
72	HPV39	E4	84	102	gcgacccattccaccgcaa	ttgcggtggaatgggtcgc	50.13	42
73	HPV35	E4	25	43	gcagcacagaactatccac	gtggatagttctgtgctgc	57.94	44
74	HPV35	E4	255	273	gaccggtgtggtagttgta	tacaactaccacaccggtc	56.16	47
75	HPV35	E4	24	42	agcagcacagaactatcca	tggatagttctgtgctgct	55.03	28
76	HPV35	E4	69	87	gcctacaacaccaccgaga	tctcggtggtgttgtaggc	54.72	36
77	HPV35	E4	253	271	aagaccggtgtggtagttg	caactaccacaccggtctt	53.8	47
78	HPV35	E4	260	278	gtgtggtagttgtagtaca	tgtactacaactaccacac	53.35	20
79	HPV35	E4	23	41	tagcagcacagaactatcc	ggatagttctgtgctgcta	53.14	37
80	HPV35	E4	67	85	acgcctacaacaccaccga	tcggtggtgttgtaggcgt	53.1	19
81	HPV35	E4	170	188	ctacaaccccaccaagcga	tcgcttggtggggttgtag	51.23	30
82	HPV35	E4	172	190	acaaccccaccaagcgagt	actcgcttggtggggttgt	51.11	24
83	HPV45	E4	2	20	tgactctatgtgcagtacc	ggtactgcacatagagtca	59.12	42
84	HPV45	E4	40	58	ctactcagattgttagaca	tgtctaacaatctgagtag	53.74	31
85	HPV45	E4	253	271	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
86	HPV45	E4	133	151	ctactaagcgacctagaca	tgtctaggtcgcttagtag	51.93	46
87	HPV45	E4	254	272	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
88	HPV45	E4	52	70	ttagacagctacaacacgc	gcgtgttgtagctgtctaa	50.44	17
89	HPV45	E4	183	201	gtcaacacccacgtgcaca	tgtgcacgtgggtgttgac	50.19	25
90	HPV45	E4	252	270	agtggtaacactacgccta	taggcgtagtgttaccact	50.13	11
91	HPV52	E4	53	71	tgtccacctatgcaccgaa	ttcggtgcataggtggaca	51.92	20
92	HPV52	E4	9	27	cctgcatctgtatctagta	tactagatacagatgcagg	50.65	49
93	HPV52	E4	54	72	gtccacctatgcaccgaaa	tttcggtgcataggtggac	50.61	21
94	HPV52	E4	120	138	caaccaccacagaaacgac	gtcgtttctgtggtggttg	50.44	35
95	HPV56	E4	113	131	tgactctgtgtctagtacc	ggtactagacacagagtca	51.62	24
96	HPV56	E4	384	402	cctggtgataagactacgc	gcgtagtcttatcaccagg	51.62	14
97	HPV56	E4	114	132	gactctgtgtctagtacct	aggtactagacacagagtc	50.7	29
98	HPV56	E4	127	145	gtacctgtagatacaacgt	acgttgtatctacaggtac	50.44	15
99	HPV56	E4	12	30	ggccacaaaacatactaca	tgtagtatgttttgtggcc	50.14	44
100	HPV56	E4	286	304	ccagagagtcccacgcaaa	tttgcgtgggactctctgg	50.14	9
101	HPV59	E4	71	89	tgactctatgtgcagtacc	ggtactgcacatagagtca	59.12	42
102	HPV59	E4	121	139	ctgagcaactatcataccc	gggtatgatagttgctcag	58.78	47
103	HPV59	E4	320	338	catcccttgcagtaacact	agtgttactgcaagggatg	58.6	47
104	HPV59	E4	328	346	gcagtaacactacgcctat	ataggcgtagtgttactgc	58.49	19
105	HPV59	E4	122	140	tgagcaactatcatacccc	ggggtatgatagttgctca	57.46	48
106	HPV59	E4	114	132	ggatcttctgagcaactat	atagttgctcagaagatcc	55.91	39
107	HPV59	E4	326	344	ttgcagtaacactacgcct	aggcgtagtgttactgcaa	55.22	22
108	HPV59	E4	327	345	tgcagtaacactacgccta	taggcgtagtgttactgca	54.95	11
109	HPV59	E4	325	343	cttgcagtaacactacgcc	ggcgtagtgttactgcaag	54.77	9
110	HPV59	E4	329	347	cagtaacactacgcctata	tataggcgtagtgttactg	54.42	17
111	HPV59	E4	324	342	ccttgcagtaacactacgc	gcgtagtgttactgcaagg	54.16	9
112	HPV59	E4	120	138	tctgagcaactatcatacc	ggtatgatagttgctcaga	52.73	35
113	HPV59	E4	90	108	agtgacgagcaagtatcca	tggatacttgctcgtcact	52.37	47
114	HPV59	E4	84	102	agtaccagtgacgagcaag	cttgctcgtcactggtact	51.28	14
115	HPV18	E4	2	20	tgactctatgtgcagtacc	ggtactgcacatagagtca	59.12	42
116	HPV18	E4	40	58	ctactcagcttgttaaaca	tgtttaacaagctgagtag	53.48	46
117	HPV18	E4	196	214	ttctcggtgcagctacacc	ggtgtagctgcaccgagaa	52.92	36
118	HPV18	E4	247	265	gtggtaacactacgcctat	ataggcgtagtgttaccac	52.48	19
119	HPV18	E4	248	266	tggtaacactacgcctata	tataggcgtagtgttacca	50.57	17
120	HPV18	E4	246	264	agtggtaacactacgccta	taggcgtagtgttaccact	50.13	11
121	HPV82	E4	235	253	ggcacctcagtgcaactaa	ttagttgcactgaggtgcc	60.15	39
122	HPV82	E4	42	60	actgttgaacagctatcga	tcgatagctgttcaacagt	52.96	10
123	HPV82	E4	110	128	ccagacaccacaacaacga	tcgttgttgtggtgtctgg	52.56	23
124	HPV82	E4	43	61	ctgttgaacagctatcgaa	ttcgatagctgttcaacag	51.83	16
125	HPV82	E4	70	88	cgaccaatacctattccgc	gcggaataggtattggtcg	50.89	15
126	HPV82	E4	71	89	gaccaatacctattccgcc	ggcggaataggtattggtc	50.52	18
127	HPV82	E4	111	129	cagacaccacaacaacgaa	ttcgttgttgtggtgtctg	50.33	12
128	HPV68	E4	14	32	ctctatgtgcagtaccact	agtggtactgcacatagag	59.25	50
129	HPV68	E4	11	29	tgactctatgtgcagtacc	ggtactgcacatagagtca	59.12	42
130	HPV68	E4	54	72	gaatctgttgccgacctac	gtaggtcggcaacagattc	54.14	15
131	HPV68	E4	20	38	gtgcagtaccactgacgga	tccgtcagtggtactgcac	52.89	30
132	HPV68	E4	69	87	ctacagaacaccaccgcga	tcgcggtggtgttctgtag	52.83	20
133	HPV68	E4	53	71	tgaatctgttgccgaccta	taggtcggcaacagattca	52.35	33
134	HPV68	E4	49	67	ctactgaatctgttgccga	tcggcaacagattcagtag	51.8	30
135	HPV68	E4	67	85	acctacagaacaccaccgc	gcggtggtgttctgtaggt	51.47	19
136	HPV68	E4	55	73	aatctgttgccgacctaca	tgtaggtcggcaacagatt	51.16	45
137	HPV68	E4	22	40	gcagtaccactgacggaaa	tttccgtcagtggtactgc	50.66	17
138	HPV26	E4	66	84	gagccagtatcaaacgcca	tggcgtttgatactggctc	53.09	29
139	HPV26	E4	65	83	tgagccagtatcaaacgcc	ggcgtttgatactggctca	50.7	33
140	HPV26	E4	228	246	cagtcagtggactatacaa	ttgtatagtccactgactg	50.43	46
141	HPV53	E4	394	412	ctggtggagcttcgtgtaa	ttacacgaagctccaccag	56.47	24
142	HPV53	E4	393	411	cctggtggagcttcgtgta	tacacgaagctccaccagg	55.28	26
143	HPV53	E4	85	103	gcacatgggaagtgcatat	atatgcacttcccatgtgc	54.93	48
144	HPV53	E4	336	354	gcagagtgtgtcgcaagga	tccttgcgacacactctgc	53.52	22
145	HPV53	E4	395	413	tggtggagcttcgtgtaac	gttacacgaagctccacca	51.92	24