HPVomics

A therapeutic and epitome resource for Human Papillomaviruses

Efficient putative LR-HPVs E6 protein epitopes (MHC-II Binders)

---

S.No.	HPV type	Target region	Peptide seuences	Start	End	Allele	Method	Percentile rank
1	HPV40	E6	NHIVKKTQFFKLKDS	117	131	HLA-DPA1*02:01/DPB1*05:01	Consensus	0.07
2	HPV40	E6	TNHIVKKTQFFKLKD	116	130	HLA-DPA1*02:01/DPB1*05:01	Consensus	0.1
3	HPV11	E6	AEIYAYAYKNLKVVW	41	55	HLA-DRB5*01:01	Consensus	0.13
4	HPV6	E6	EIYSYAYKHLKVLFR	42	56	HLA-DRB1*11:01	Consensus	0.14
5	HPV6	E6	IYSYAYKHLKVLFRG	43	57	HLA-DRB1*11:01	Consensus	0.14
6	HPV6	E6	YSYAYKHLKVLFRGG	44	58	HLA-DRB1*11:01	Consensus	0.14
7	HPV6	E6	SYAYKHLKVLFRGGY	45	59	HLA-DRB1*11:01	Consensus	0.14
8	HPV6	E6	YAYKHLKVLFRGGYP	46	60	HLA-DRB1*11:01	Consensus	0.14
9	HPV40	E6	KTNHIVKKTQFFKLK	115	129	HLA-DPA1*02:01/DPB1*05:01	Consensus	0.14
10	HPV11	E6	TAEIYAYAYKNLKVV	40	54	HLA-DRB5*01:01	Consensus	0.15
11	HPV70	E6	LCPAEKLRHVNTKRR	112	126	HLA-DRB5*01:01	Consensus	0.15
12	HPV70	E6	CPAEKLRHVNTKRRF	113	127	HLA-DRB5*01:01	Consensus	0.15
13	HPV70	E6	PAEKLRHVNTKRRFH	114	128	HLA-DRB5*01:01	Consensus	0.15
14	HPV70	E6	AEKLRHVNTKRRFHQ	115	129	HLA-DRB5*01:01	Consensus	0.15
15	HPV70	E6	EKLRHVNTKRRFHQI	116	130	HLA-DRB5*01:01	Consensus	0.15
16	HPV40	E6	TNHIVKKTQFFKLKD	116	130	HLA-DPA1*02:01/DPB1*01:01	Consensus	0.17
17	HPV40	E6	NHIVKKTQFFKLKDS	117	131	HLA-DPA1*02:01/DPB1*01:01	Consensus	0.19
18	HPV54	E6	VDYNRRFHCVRGYWK	151	165	HLA-DRB5*01:01	Consensus	0.23
19	HPV54	E6	YNRRFHCVRGYWKGR	153	167	HLA-DRB5*01:01	Consensus	0.24
20	HPV40	E6	EKTNHIVKKTQFFKL	114	128	HLA-DPA1*02:01/DPB1*05:01	Consensus	0.25
21	HPV54	E6	DYNRRFHCVRGYWKG	152	166	HLA-DRB5*01:01	Consensus	0.25
22	HPV11	E6	LCEIEKLKHILGKAR	111	125	HLA-DRB5*01:01	Consensus	0.26
23	HPV11	E6	CEIEKLKHILGKARF	112	126	HLA-DRB5*01:01	Consensus	0.26
24	HPV11	E6	EIEKLKHILGKARFI	113	127	HLA-DRB5*01:01	Consensus	0.26
25	HPV11	E6	IEKLKHILGKARFIK	114	128	HLA-DRB5*01:01	Consensus	0.26
26	HPV11	E6	EKLKHILGKARFIKL	115	129	HLA-DRB5*01:01	Consensus	0.26
27	HPV11	E6	KLKHILGKARFIKLN	116	130	HLA-DRB5*01:01	Consensus	0.26
28	HPV11	E6	LKHILGKARFIKLNN	117	131	HLA-DRB5*01:01	Consensus	0.26
29	HPV11	E6	TTAEIYAYAYKNLKV	39	53	HLA-DRB5*01:01	Consensus	0.26
30	HPV11	E6	EIYAYAYKNLKVVWR	42	56	HLA-DRB5*01:01	Consensus	0.26
31	HPV40	E6	HIVKKTQFFKLKDSW	118	132	HLA-DPA1*02:01/DPB1*01:01	Consensus	0.26
32	HPV54	E6	NRRFHCVRGYWKGRC	154	168	HLA-DRB5*01:01	Consensus	0.26
33	HPV54	E6	RRFHCVRGYWKGRCL	155	169	HLA-DRB5*01:01	Consensus	0.26
34	HPV6	E6	EIYSYAYKHLKVLFR	42	56	HLA-DRB5*01:01	Consensus	0.37
35	HPV40	E6	KTNHIVKKTQFFKLK	115	129	HLA-DPA1*02:01/DPB1*01:01	Consensus	0.39
36	HPV6	E6	IYSYAYKHLKVLFRG	43	57	HLA-DRB5*01:01	Consensus	0.42
37	HPV11	E6	LTTAEIYAYAYKNLK	38	52	HLA-DRB5*01:01	Consensus	0.45
38	HPV11	E6	IYAYAYKNLKVVWRD	43	57	HLA-DRB5*01:01	Consensus	0.48
39	HPV6	E6	LCEVEKVKHILTKAR	111	125	HLA-DRB5*01:01	Consensus	0.49
40	HPV6	E6	CEVEKVKHILTKARF	112	126	HLA-DRB5*01:01	Consensus	0.49
41	HPV6	E6	EVEKVKHILTKARFI	113	127	HLA-DRB5*01:01	Consensus	0.49
42	HPV6	E6	VEKVKHILTKARFIK	114	128	HLA-DRB5*01:01	Consensus	0.49
43	HPV6	E6	EKVKHILTKARFIKL	115	129	HLA-DRB5*01:01	Consensus	0.49
44	HPV6	E6	YSYAYKHLKVLFRGG	44	58	HLA-DRB5*01:01	Consensus	0.54
45	HPV6	E6	AEIYSYAYKHLKVLF	41	55	HLA-DRB5*01:01	Consensus	0.57
46	HPV44	E6	SFAYKQLYVVYRGNF	45	59	HLA-DRB5*01:01	Consensus	0.57
47	HPV43	E6	IVQKAQFFKIHSVWK	120	134	HLA-DRB5*01:01	Consensus	0.62
48	HPV6	E6	TAEIYSYAYKHLKVL	40	54	HLA-DRB5*01:01	Consensus	0.66
49	HPV54	E6	LCLELHGQINYRRHR	97	111	HLA-DRB5*01:01	Consensus	0.66
50	HPV54	E6	CLELHGQINYRRHRD	98	112	HLA-DRB5*01:01	Consensus	0.69
51	HPV40	E6	IVKKTQFFKLKDSWT	119	133	HLA-DPA1*02:01/DPB1*01:01	Consensus	0.73
52	HPV6	E6	TTAEIYSYAYKHLKV	39	53	HLA-DRB5*01:01	Consensus	0.75
53	HPV11	E6	ILGKARFIKLNNQWK	120	134	HLA-DRB5*01:01	Consensus	0.78
54	HPV11	E6	LGKARFIKLNNQWKG	121	135	HLA-DRB5*01:01	Consensus	0.78
55	HPV11	E6	GKARFIKLNNQWKGR	122	136	HLA-DRB5*01:01	Consensus	0.78
56	HPV11	E6	KARFIKLNNQWKGRC	123	137	HLA-DRB5*01:01	Consensus	0.78
57	HPV11	E6	ARFIKLNNQWKGRCL	124	138	HLA-DRB5*01:01	Consensus	0.78
58	HPV44	E6	YSFAYKQLYVVYRGN	44	58	HLA-DRB5*01:01	Consensus	0.81
59	HPV6	E6	SYAYKHLKVLFRGGY	45	59	HLA-DRB5*01:01	Consensus	0.84
60	HPV11	E6	YAYAYKNLKVVWRDN	44	58	HLA-DRB5*01:01	Consensus	0.84
61	HPV44	E6	FAYKQLYVVYRGNFP	46	60	HLA-DRB5*01:01	Consensus	0.87
62	HPV6	E6	YAYKHLKVLFRGGYP	46	60	HLA-DRB5*01:01	Consensus	0.95
63	HPV6	E6	AYKHLKVLFRGGYPY	47	61	HLA-DRB5*01:01	Consensus	0.95
64	HPV6	E6	YKHLKVLFRGGYPYA	48	62	HLA-DRB5*01:01	Consensus	0.95
65	HPV40	E6	TVEEETGLTILQVRI	87	101	HLA-DQA1*01:02/DQB1*06:02	Consensus	0.95
66	HPV42	E6	CAFCLEFNSKICALR	64	78	HLA-DRB5*01:01	Consensus	0.97
67	HPV70	E6	YSNSVYATTLESITN	81	95	HLA-DPA1*03:01/DPB1*04:02	Consensus	0.98
68	HPV70	E6	QTEVYEFAFSDLFIV	41	55	HLA-DPA1*02:01/DPB1*01:01	Consensus	0.98
69	HPV43	E6	CLQFHGKISQYRHFD	67	81	HLA-DRB5*01:01	Consensus	1
70	HPV44	E6	VYSFAYKQLYVVYRG	43	57	HLA-DRB5*01:01	Consensus	1