HPVomics

A therapeutic and epitome resource for Human Papillomaviruses

Predicted highly potential siRNAs (HR-HPVs)

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S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV16	E5	26	44	caacattactggcgtgctt	aagcacgccagtaatgttg	57.12	35
2	HPV16	E5	154	172	acagcagcctctgcgttta	taaacgcagaggctgctgt	52.88	22
3	HPV16	E5	23	41	ccacaacattactggcgtg	cacgccagtaatgttgtgg	50.71	31
4	HPV31	E5	157	175	gcaacctctccattacgtt	aacgtaatggagaggttgc	54.69	16
5	HPV31	E5	25	43	gtaagcattgtgctatgct	agcatagcacaatgcttac	53.1	29
6	HPV31	E5	158	176	caacctctccattacgttg	caacgtaatggagaggttg	51.59	14
7	HPV31	E5	156	174	tgcaacctctccattacgt	acgtaatggagaggttgca	51.5	7
8	HPV31	E5	112	130	gtatatgcaacactactat	atagtagtgttgcatatac	50.4	48
9	HPV31	E5	99	117	gctgtctgtgtcggtatat	atataccgacacagacagc	50.12	7
10	HPV39	E5	181	199	atgtggttgttgcatagac	gtctatgcaacaaccacat	54.68	39
11	HPV39	E5	182	200	tgtggttgttgcatagact	agtctatgcaacaaccaca	52.69	35
12	HPV35	E5	154	172	gtagcaacaccactacgtt	aacgtagtggtgttgctac	55.14	9
13	HPV35	E5	157	175	gcaacaccactacgttgct	agcaacgtagtggtgttgc	54.92	30
14	HPV35	E5	156	174	agcaacaccactacgttgc	gcaacgtagtggtgttgct	53.68	18
15	HPV35	E5	155	173	tagcaacaccactacgttg	caacgtagtggtgttgcta	52.63	14
16	HPV35	E5	152	170	ctgtagcaacaccactacg	cgtagtggtgttgctacag	52.33	45
17	HPV35	E5	158	176	caacaccactacgttgctt	aagcaacgtagtggtgttg	52.02	19
18	HPV35	E5	153	171	tgtagcaacaccactacgt	acgtagtggtgttgctaca	51.85	9
19	HPV35	E5	75	93	tctgcttgtacgttcgcta	tagcgaacgtacaagcaga	50.47	12
20	HPV35	E5	76	94	ctgcttgtacgttcgctat	atagcgaacgtacaagcag	50.36	6
21	HPV45	E5	50	68	gctgcaatgtcccgcttgt	acaagcgggacattgcagc	50.99	24
22	HPV45	E5	48	66	gtgctgcaatgtcccgctt	aagcgggacattgcagcac	50.33	43
23	HPV52	E5	78	96	atcggtgtatgcgcaggtg	cacctgcgcatacaccgat	53.98	31
24	HPV52	E5	76	94	atatcggtgtatgcgcagg	cctgcgcatacaccgatat	53.34	30
25	HPV52	E5	44	62	tttgtgcagtgcttaggcc	ggcctaagcactgcacaaa	51.2	34
26	HPV59	E5	48	66	gtgttgcaatgtcccgctt	aagcgggacattgcaacac	52.22	43
27	HPV59	E5	50	68	gttgcaatgtcccgcttct	agaagcgggacattgcaac	52.19	20
28	HPV18	E5	48	66	gtgctgccatgtcccgctt	aagcgggacatggcagcac	50.7	43
29	HPV68	E5	143	161	aggtgtttgctgtatacct	aggtatacagcaaacacct	55.91	33
30	HPV68	E5	47	65	tatgttgcactgtcccgct	agcgggacagtgcaacata	53.99	21
31	HPV68	E5	48	66	atgttgcactgtcccgctt	aagcgggacagtgcaacat	52.3	43
32	HPV68	E5	46	64	atatgttgcactgtcccgc	gcgggacagtgcaacatat	50.89	32
33	HPV68	E5	146	164	tgtttgctgtatacctact	agtaggtatacagcaaaca	50.7	46
34	HPV68	E5	49	67	tgttgcactgtcccgcttt	aaagcgggacagtgcaaca	50.62	22
35	HPV68	E5	50	68	gttgcactgtcccgctttt	aaaagcgggacagtgcaac	50.02	28