A therapeutic and epitome resource for Human Papillomaviruses
Predicted highly potential siRNAs (HR-HPVs)
S.No. |
HPV type |
HPV target region |
Start position |
End position |
Sense |
Antisense |
Inhibition (%) |
Off-target (seed) |
1 |
HPV16 |
E1 |
100 |
118 |
tcagatgacgagaacgaaa |
tttcgttctcgtcatctga |
79.53 |
49 |
2 |
HPV16 |
E1 |
925 |
943 |
cctccaaaattgcgtagta |
tactacgcaattttggagg |
76.39 |
16 |
3 |
HPV16 |
E1 |
1224 |
1242 |
gtgtagacattataaacga |
tcgtttataatgtctacac |
76.11 |
19 |
4 |
HPV16 |
E1 |
1081 |
1099 |
gtacaatgggcctacgata |
tatcgtaggcccattgtac |
74.11 |
19 |
5 |
HPV16 |
E1 |
194 |
212 |
agacagcacatgcgttgtt |
aacaacgcatgtgctgtct |
73.68 |
9 |
6 |
HPV16 |
E1 |
462 |
480 |
aacaccatgtagtcagtat |
atactgactacatggtgtt |
72.7 |
46 |
7 |
HPV16 |
E1 |
262 |
280 |
cgaaagtatttgggtagtc |
gactacccaaatactttcg |
71.02 |
25 |
8 |
HPV16 |
E1 |
372 |
390 |
gagattatttgaaagcgaa |
ttcgctttcaaataatctc |
70.79 |
30 |
9 |
HPV16 |
E1 |
1082 |
1100 |
tacaatgggcctacgataa |
ttatcgtaggcccattgta |
70.57 |
11 |
10 |
HPV16 |
E1 |
1853 |
1871 |
ccagattaagtttgcacga |
tcgtgcaaacttaatctgg |
70.29 |
19 |
11 |
HPV16 |
E1 |
373 |
391 |
agattatttgaaagcgaag |
cttcgctttcaaataatct |
70.19 |
33 |
12 |
HPV16 |
E1 |
371 |
389 |
ggagattatttgaaagcga |
tcgctttcaaataatctcc |
69.39 |
33 |
13 |
HPV16 |
E1 |
922 |
940 |
gagcctccaaaattgcgta |
tacgcaattttggaggctc |
69.23 |
7 |
14 |
HPV16 |
E1 |
1855 |
1873 |
agattaagtttgcacgagg |
cctcgtgcaaacttaatct |
69.22 |
35 |
15 |
HPV16 |
E1 |
1103 |
1121 |
acatagtagacgatagtga |
tcactatcgtctactatgt |
68.55 |
50 |
16 |
HPV16 |
E1 |
1649 |
1667 |
agcatagaccattggtaca |
tgtaccaatggtctatgct |
68.21 |
41 |
17 |
HPV16 |
E1 |
26 |
44 |
gggaagagggtacgggatg |
catcccgtaccctcttccc |
67.29 |
15 |
18 |
HPV16 |
E1 |
306 |
324 |
agacaataatattagtcct |
aggactaatattattgtct |
66.53 |
46 |
19 |
HPV16 |
E1 |
195 |
213 |
gacagcacatgcgttgttt |
aaacaacgcatgtgctgtc |
66.11 |
11 |
20 |
HPV16 |
E1 |
1101 |
1119 |
tgacatagtagacgatagt |
actatcgtctactatgtca |
63.24 |
5 |
21 |
HPV16 |
E1 |
921 |
939 |
agagcctccaaaattgcgt |
acgcaattttggaggctct |
62.77 |
12 |
22 |
HPV16 |
E1 |
1641 |
1659 |
ggatgtaaagcatagacca |
tggtctatgctttacatcc |
60.92 |
41 |
23 |
HPV16 |
E1 |
1898 |
1916 |
actctttgccaacgtttaa |
ttaaacgttggcaaagagt |
60.39 |
35 |
24 |
HPV16 |
E1 |
27 |
45 |
ggaagagggtacgggatgt |
acatcccgtaccctcttcc |
60 |
47 |
25 |
HPV16 |
E1 |
1652 |
1670 |
atagaccattggtacaact |
agttgtaccaatggtctat |
59.23 |
31 |
26 |
HPV16 |
E1 |
927 |
945 |
tccaaaattgcgtagtaca |
tgtactacgcaattttgga |
59.11 |
20 |
27 |
HPV16 |
E1 |
688 |
706 |
aaatcaacgtgttgcgatt |
aatcgcaacacgttgattt |
58.45 |
11 |
28 |
HPV16 |
E1 |
1098 |
1116 |
taatgacatagtagacgat |
atcgtctactatgtcatta |
58.14 |
8 |
29 |
HPV16 |
E1 |
1423 |
1441 |
ctatatggtgcagctaaca |
tgttagctgcaccatatag |
57.92 |
47 |
30 |
HPV16 |
E1 |
923 |
941 |
agcctccaaaattgcgtag |
ctacgcaattttggaggct |
57.84 |
13 |
31 |
HPV16 |
E1 |
233 |
251 |
aacatagagatgcagtaca |
tgtactgcatctctatgtt |
57.74 |
42 |
32 |
HPV16 |
E1 |
33 |
51 |
gggtacgggatgtaatgga |
tccattacatcccgtaccc |
57.64 |
50 |
33 |
HPV16 |
E1 |
388 |
406 |
gaagacagcgggtatggca |
tgccatacccgctgtcttc |
57.35 |
31 |
34 |
HPV16 |
E1 |
296 |
314 |
gtggatgtgtagacaataa |
ttattgtctacacatccac |
56.54 |
47 |
35 |
HPV16 |
E1 |
994 |
1012 |
gtgtatggagacacgccag |
ctggcgtgtctccatacac |
56.48 |
40 |
36 |
HPV16 |
E1 |
1229 |
1247 |
gacattataaacgagcaga |
tctgctcgtttataatgtc |
56.29 |
34 |
37 |
HPV16 |
E1 |
992 |
1010 |
aagtgtatggagacacgcc |
ggcgtgtctccatacactt |
56.16 |
17 |
38 |
HPV16 |
E1 |
991 |
1009 |
gaagtgtatggagacacgc |
gcgtgtctccatacacttc |
55.95 |
37 |
39 |
HPV16 |
E1 |
374 |
392 |
gattatttgaaagcgaaga |
tcttcgctttcaaataatc |
55.89 |
17 |
40 |
HPV16 |
E1 |
193 |
211 |
gagacagcacatgcgttgt |
acaacgcatgtgctgtctc |
55.65 |
28 |
41 |
HPV16 |
E1 |
1097 |
1115 |
ataatgacatagtagacga |
tcgtctactatgtcattat |
55.62 |
9 |
42 |
HPV16 |
E1 |
718 |
736 |
gcatttggacttacaccca |
tgggtgtaagtccaaatgc |
55.52 |
35 |
43 |
HPV16 |
E1 |
263 |
281 |
gaaagtatttgggtagtcc |
ggactacccaaatactttc |
54.7 |
37 |
44 |
HPV16 |
E1 |
101 |
119 |
cagatgacgagaacgaaaa |
ttttcgttctcgtcatctg |
54.6 |
34 |
45 |
HPV16 |
E1 |
926 |
944 |
ctccaaaattgcgtagtac |
gtactacgcaattttggag |
54.55 |
16 |
46 |
HPV16 |
E1 |
1080 |
1098 |
ggtacaatgggcctacgat |
atcgtaggcccattgtacc |
54.23 |
7 |
47 |
HPV16 |
E1 |
1143 |
1161 |
attggcagacactaatagt |
actattagtgtctgccaat |
54.22 |
39 |
48 |
HPV16 |
E1 |
1084 |
1102 |
caatgggcctacgataatg |
cattatcgtaggcccattg |
54.1 |
16 |
49 |
HPV16 |
E1 |
102 |
120 |
agatgacgagaacgaaaat |
attttcgttctcgtcatct |
54.07 |
31 |
50 |
HPV16 |
E1 |
1854 |
1872 |
cagattaagtttgcacgag |
ctcgtgcaaacttaatctg |
53.96 |
27 |
51 |
HPV16 |
E1 |
1895 |
1913 |
gagactctttgccaacgtt |
aacgttggcaaagagtctc |
53.86 |
40 |
52 |
HPV16 |
E1 |
1083 |
1101 |
acaatgggcctacgataat |
attatcgtaggcccattgt |
53.71 |
5 |
53 |
HPV16 |
E1 |
98 |
116 |
tatcagatgacgagaacga |
tcgttctcgtcatctgata |
53.17 |
44 |
54 |
HPV16 |
E1 |
468 |
486 |
atgtagtcagtatagtggt |
accactatactgactacat |
53.08 |
48 |
55 |
HPV16 |
E1 |
97 |
115 |
atatcagatgacgagaacg |
cgttctcgtcatctgatat |
53.03 |
35 |
56 |
HPV16 |
E1 |
993 |
1011 |
agtgtatggagacacgcca |
tggcgtgtctccatacact |
53.02 |
42 |
57 |
HPV16 |
E1 |
995 |
1013 |
tgtatggagacacgccaga |
tctggcgtgtctccataca |
53 |
34 |
58 |
HPV16 |
E1 |
1582 |
1600 |
tgttggaactacatagatg |
catctatgtagttccaaca |
52.95 |
50 |
59 |
HPV16 |
E1 |
1642 |
1660 |
gatgtaaagcatagaccat |
atggtctatgctttacatc |
52.89 |
47 |
60 |
HPV16 |
E1 |
1226 |
1244 |
gtagacattataaacgagc |
gctcgtttataatgtctac |
52.73 |
38 |
61 |
HPV16 |
E1 |
99 |
117 |
atcagatgacgagaacgaa |
ttcgttctcgtcatctgat |
52.59 |
40 |
62 |
HPV16 |
E1 |
996 |
1014 |
gtatggagacacgccagaa |
ttctggcgtgtctccatac |
52.53 |
32 |
63 |
HPV16 |
E1 |
495 |
513 |
gggtggttgcagtcagtac |
gtactgactgcaaccaccc |
52.35 |
46 |
64 |
HPV16 |
E1 |
1227 |
1245 |
tagacattataaacgagca |
tgctcgtttataatgtcta |
52.28 |
13 |
65 |
HPV16 |
E1 |
1771 |
1789 |
gagtttccatttgacgaaa |
tttcgtcaaatggaaactc |
51.78 |
24 |
66 |
HPV16 |
E1 |
4 |
22 |
gctgatcctgcaggtacca |
tggtacctgcaggatcagc |
51.75 |
35 |
67 |
HPV16 |
E1 |
1770 |
1788 |
tgagtttccatttgacgaa |
ttcgtcaaatggaaactca |
51.75 |
7 |
68 |
HPV16 |
E1 |
726 |
744 |
acttacacccagtatagct |
agctatactgggtgtaagt |
51.69 |
48 |
69 |
HPV16 |
E1 |
1711 |
1729 |
ggtacagattctaggtggc |
gccacctagaatctgtacc |
51.49 |
34 |
70 |
HPV16 |
E1 |
1894 |
1912 |
ggagactctttgccaacgt |
acgttggcaaagagtctcc |
51.42 |
19 |
71 |
HPV16 |
E1 |
376 |
394 |
ttatttgaaagcgaagaca |
tgtcttcgctttcaaataa |
51.28 |
21 |
72 |
HPV16 |
E1 |
25 |
43 |
ggggaagagggtacgggat |
atcccgtaccctcttcccc |
51.24 |
10 |
73 |
HPV16 |
E1 |
1102 |
1120 |
gacatagtagacgatagtg |
cactatcgtctactatgtc |
51.23 |
2 |
74 |
HPV16 |
E1 |
1077 |
1095 |
gatggtacaatgggcctac |
gtaggcccattgtaccatc |
50.99 |
28 |
75 |
HPV16 |
E1 |
1079 |
1097 |
tggtacaatgggcctacga |
tcgtaggcccattgtacca |
50.97 |
14 |
76 |
HPV16 |
E1 |
1099 |
1117 |
aatgacatagtagacgata |
tatcgtctactatgtcatt |
50.93 |
11 |
77 |
HPV16 |
E1 |
1897 |
1915 |
gactctttgccaacgttta |
taaacgttggcaaagagtc |
50.87 |
26 |
78 |
HPV16 |
E1 |
1639 |
1657 |
atggatgtaaagcatagac |
gtctatgctttacatccat |
50.64 |
39 |
79 |
HPV16 |
E1 |
1228 |
1246 |
agacattataaacgagcag |
ctgctcgtttataatgtct |
50.51 |
22 |
80 |
HPV16 |
E1 |
1074 |
1092 |
acagatggtacaatgggcc |
ggcccattgtaccatctgt |
50.47 |
50 |
81 |
HPV16 |
E1 |
814 |
832 |
ggaatggttgtgttactat |
atagtaacacaaccattcc |
50.11 |
49 |
82 |
HPV16 |
E1 |
1640 |
1658 |
tggatgtaaagcatagacc |
ggtctatgctttacatcca |
50.03 |
35 |
83 |
HPV31 |
E1 |
1164 |
1182 |
gtgtagacattataaacga |
tcgtttataatgtctacac |
76.11 |
19 |
84 |
HPV31 |
E1 |
404 |
422 |
atactgaagtggaaacgca |
tgcgtttccacttcagtat |
63.37 |
33 |
85 |
HPV31 |
E1 |
1661 |
1679 |
acagatggccatacctaca |
tgtaggtatggccatctgt |
62.03 |
46 |
86 |
HPV31 |
E1 |
1503 |
1521 |
agatgatgctacaacgcca |
tggcgttgtagcatcatct |
58.75 |
26 |
87 |
HPV31 |
E1 |
1793 |
1811 |
gcagattaaatttgcacga |
tcgtgcaaatttaatctgc |
58.2 |
19 |
88 |
HPV31 |
E1 |
1365 |
1383 |
acatggtgcacctaataca |
tgtattaggtgcaccatgt |
58.12 |
40 |
89 |
HPV31 |
E1 |
407 |
425 |
ctgaagtggaaacgcagca |
tgctgcgtttccacttcag |
57.36 |
28 |
90 |
HPV31 |
E1 |
1169 |
1187 |
gacattataaacgagcaga |
tctgctcgtttataatgtc |
56.29 |
34 |
91 |
HPV31 |
E1 |
1795 |
1813 |
agattaaatttgcacgagg |
cctcgtgcaaatttaatct |
56.15 |
35 |
92 |
HPV31 |
E1 |
1544 |
1562 |
acctacgaaatgcactaga |
tctagtgcatttcgtaggt |
55.99 |
43 |
93 |
HPV31 |
E1 |
463 |
481 |
tgtaatggtagtgacggga |
tcccgtcactaccattaca |
55.6 |
42 |
94 |
HPV31 |
E1 |
1554 |
1572 |
tgcactagatggcaaccct |
agggttgccatctagtgca |
55.58 |
41 |
95 |
HPV31 |
E1 |
481 |
499 |
acacatagtgaacgagaga |
tctctcgttcactatgtgt |
55.22 |
18 |
96 |
HPV31 |
E1 |
1504 |
1522 |
gatgatgctacaacgccat |
atggcgttgtagcatcatc |
54.14 |
26 |
97 |
HPV31 |
E1 |
1534 |
1552 |
atagacaattacctacgaa |
ttcgtaggtaattgtctat |
53.91 |
7 |
98 |
HPV31 |
E1 |
461 |
479 |
gttgtaatggtagtgacgg |
ccgtcactaccattacaac |
53.43 |
19 |
99 |
HPV31 |
E1 |
648 |
666 |
gtgtgtagctgcgtttgga |
tccaaacgcagctacacac |
52.99 |
13 |
100 |
HPV31 |
E1 |
914 |
932 |
gaatgtcaaacattagcga |
tcgctaatgtttgacattc |
52.91 |
8 |
101 |
HPV31 |
E1 |
406 |
424 |
actgaagtggaaacgcagc |
gctgcgtttccacttcagt |
52.73 |
26 |
102 |
HPV31 |
E1 |
1166 |
1184 |
gtagacattataaacgagc |
gctcgtttataatgtctac |
52.73 |
38 |
103 |
HPV31 |
E1 |
462 |
480 |
ttgtaatggtagtgacggg |
cccgtcactaccattacaa |
52.48 |
19 |
104 |
HPV31 |
E1 |
1167 |
1185 |
tagacattataaacgagca |
tgctcgtttataatgtcta |
52.28 |
13 |
105 |
HPV31 |
E1 |
482 |
500 |
cacatagtgaacgagagaa |
ttctctcgttcactatgtg |
52.21 |
35 |
106 |
HPV31 |
E1 |
479 |
497 |
ggacacatagtgaacgaga |
tctcgttcactatgtgtcc |
52.19 |
31 |
107 |
HPV31 |
E1 |
644 |
662 |
attggtgtgtagctgcgtt |
aacgcagctacacaccaat |
52.19 |
49 |
108 |
HPV31 |
E1 |
1553 |
1571 |
atgcactagatggcaaccc |
gggttgccatctagtgcat |
51.86 |
49 |
109 |
HPV31 |
E1 |
643 |
661 |
gattggtgtgtagctgcgt |
acgcagctacacaccaatc |
51.66 |
49 |
110 |
HPV31 |
E1 |
889 |
907 |
gcagcattatattggtaca |
tgtaccaatataatgctgc |
51.65 |
41 |
111 |
HPV31 |
E1 |
1657 |
1675 |
gatgacagatggccatacc |
ggtatggccatctgtcatc |
51.58 |
19 |
112 |
HPV31 |
E1 |
405 |
423 |
tactgaagtggaaacgcag |
ctgcgtttccacttcagta |
51.32 |
23 |
113 |
HPV31 |
E1 |
465 |
483 |
taatggtagtgacgggaca |
tgtcccgtcactaccatta |
51.25 |
16 |
114 |
HPV31 |
E1 |
259 |
277 |
cgaaagtatgtaggtagtc |
gactacctacatactttcg |
51.16 |
46 |
115 |
HPV31 |
E1 |
918 |
936 |
gtcaaacattagcgatgta |
tacatcgctaatgtttgac |
51.08 |
12 |
116 |
HPV31 |
E1 |
862 |
880 |
cagccacccaaattacgta |
tacgtaatttgggtggctg |
50.96 |
16 |
117 |
HPV31 |
E1 |
464 |
482 |
gtaatggtagtgacgggac |
gtcccgtcactaccattac |
50.81 |
30 |
118 |
HPV31 |
E1 |
597 |
615 |
tatggaactaattaggcca |
tggcctaattagttccata |
50.79 |
43 |
119 |
HPV31 |
E1 |
89 |
107 |
acaacatttcagaggacga |
tcgtcctctgaaatgttgt |
50.74 |
38 |
120 |
HPV31 |
E1 |
907 |
925 |
agaacaggaatgtcaaaca |
tgtttgacattcctgttct |
50.71 |
49 |
121 |
HPV31 |
E1 |
90 |
108 |
caacatttcagaggacgaa |
ttcgtcctctgaaatgttg |
50.58 |
31 |
122 |
HPV31 |
E1 |
1168 |
1186 |
agacattataaacgagcag |
ctgctcgtttataatgtct |
50.51 |
22 |
123 |
HPV31 |
E1 |
209 |
227 |
ttcatgcacaggaagcgga |
tccgcttcctgtgcatgaa |
50.48 |
38 |
124 |
HPV31 |
E1 |
1656 |
1674 |
ggatgacagatggccatac |
gtatggccatctgtcatcc |
50.38 |
35 |
125 |
HPV31 |
E1 |
1506 |
1524 |
tgatgctacaacgccatgt |
acatggcgttgtagcatca |
50.24 |
48 |
126 |
HPV31 |
E1 |
1533 |
1551 |
tatagacaattacctacga |
tcgtaggtaattgtctata |
50.18 |
15 |
127 |
HPV31 |
E1 |
382 |
400 |
cttccagacagcgggtatg |
catacccgctgtctggaag |
50.15 |
11 |
128 |
HPV33 |
E1 |
419 |
437 |
ctcagcagatggtacaaca |
tgttgtaccatctgctgag |
58.85 |
31 |
129 |
HPV33 |
E1 |
516 |
534 |
tgagacaaatgtagatagc |
gctatctacatttgtctca |
54.15 |
38 |
130 |
HPV33 |
E1 |
121 |
139 |
gatgacagtggcacggatt |
aatccgtgccactgtcatc |
53.94 |
46 |
131 |
HPV33 |
E1 |
517 |
535 |
gagacaaatgtagatagct |
agctatctacatttgtctc |
53.59 |
49 |
132 |
HPV33 |
E1 |
120 |
138 |
agatgacagtggcacggat |
atccgtgccactgtcatct |
53.26 |
28 |
133 |
HPV33 |
E1 |
56 |
74 |
aggtagaagcagtcataga |
tctatgactgcttctacct |
52.35 |
48 |
134 |
HPV33 |
E1 |
987 |
1005 |
acctgaatggatagataga |
tctatctatccattcaggt |
52.3 |
38 |
135 |
HPV33 |
E1 |
382 |
400 |
ctagaagacagcggatatg |
catatccgctgtcttctag |
52.17 |
10 |
136 |
HPV33 |
E1 |
378 |
396 |
tgagctagaagacagcgga |
tccgctgtcttctagctca |
51.98 |
36 |
137 |
HPV33 |
E1 |
946 |
964 |
agaacagcaatgtcaaaca |
tgtttgacattgctgttct |
51.52 |
49 |
138 |
HPV33 |
E1 |
122 |
140 |
atgacagtggcacggattt |
aaatccgtgccactgtcat |
51.17 |
17 |
139 |
HPV33 |
E1 |
285 |
303 |
tgctgcggaggacgttgtt |
aacaacgtcctccgcagca |
50.68 |
9 |
140 |
HPV33 |
E1 |
989 |
1007 |
ctgaatggatagatagact |
agtctatctatccattcag |
50.03 |
39 |
141 |
HPV18 |
E1 |
962 |
980 |
gtagtgttgcagcactata |
tatagtgctgcaacactac |
60.8 |
42 |
142 |
HPV18 |
E1 |
1874 |
1892 |
ccagattagatttgcacga |
tcgtgcaaatctaatctgg |
59.07 |
19 |
143 |
HPV18 |
E1 |
1876 |
1894 |
agattagatttgcacgagg |
cctcgtgcaaatctaatct |
58.78 |
35 |
144 |
HPV18 |
E1 |
200 |
218 |
aggcattgttccatgcgca |
tgcgcatggaacaatgcct |
58.11 |
15 |
145 |
HPV18 |
E1 |
97 |
115 |
tcagatgacgaggacgaaa |
tttcgtcctcgtcatctga |
57.87 |
23 |
146 |
HPV18 |
E1 |
1245 |
1263 |
gtgcaaacattataggcga |
tcgcctataatgtttgcac |
57.83 |
23 |
147 |
HPV18 |
E1 |
199 |
217 |
caggcattgttccatgcgc |
gcgcatggaacaatgcctg |
56.15 |
2 |
148 |
HPV18 |
E1 |
475 |
493 |
gtatgtagtggcggcagta |
tactgccgccactacatac |
55.26 |
38 |
149 |
HPV18 |
E1 |
1582 |
1600 |
ttagatgatgcaacgacca |
tggtcgttgcatcatctaa |
55.16 |
15 |
150 |
HPV18 |
E1 |
1331 |
1349 |
gagattggagaccaatagt |
actattggtctccaatctc |
54.7 |
39 |
151 |
HPV18 |
E1 |
204 |
222 |
attgttccatgcgcaggag |
ctcctgcgcatggaacaat |
54.14 |
18 |
152 |
HPV18 |
E1 |
471 |
489 |
caatgtatgtagtggcggc |
gccgccactacatacattg |
54.05 |
47 |
153 |
HPV18 |
E1 |
531 |
549 |
cagcagtgtagacggtaca |
tgtaccgtctacactgctg |
53.83 |
10 |
154 |
HPV18 |
E1 |
1899 |
1917 |
ggaagatgcagacaccgaa |
ttcggtgtctgcatcttcc |
53.83 |
17 |
155 |
HPV18 |
E1 |
847 |
865 |
ttagccctgttgcgttaca |
tgtaacgcaacagggctaa |
53.7 |
21 |
156 |
HPV18 |
E1 |
201 |
219 |
ggcattgttccatgcgcag |
ctgcgcatggaacaatgcc |
53.58 |
6 |
157 |
HPV18 |
E1 |
202 |
220 |
gcattgttccatgcgcagg |
cctgcgcatggaacaatgc |
53.09 |
30 |
158 |
HPV18 |
E1 |
1581 |
1599 |
gttagatgatgcaacgacc |
ggtcgttgcatcatctaac |
53.07 |
10 |
159 |
HPV18 |
E1 |
631 |
649 |
caaggagctatgttagcag |
ctgctaacatagctccttg |
53.04 |
47 |
160 |
HPV18 |
E1 |
1250 |
1268 |
aacattataggcgagccca |
tgggctcgcctataatgtt |
53.02 |
20 |
161 |
HPV18 |
E1 |
1348 |
1366 |
gtgcaattcctgcgatacc |
ggtatcgcaggaattgcac |
53.02 |
6 |
162 |
HPV18 |
E1 |
397 |
415 |
tcagatagtggctatggct |
agccatagccactatctga |
52.84 |
49 |
163 |
HPV18 |
E1 |
1523 |
1541 |
ttgtgaattccactagtca |
tgactagtggaattcacaa |
52.83 |
29 |
164 |
HPV18 |
E1 |
1126 |
1144 |
ctgacagatgaaagcgata |
tatcgctttcatctgtcag |
52.78 |
49 |
165 |
HPV18 |
E1 |
714 |
732 |
cacgtgtacagattgggtt |
aacccaatctgtacacgtg |
52.56 |
48 |
166 |
HPV18 |
E1 |
1247 |
1265 |
gcaaacattataggcgagc |
gctcgcctataatgtttgc |
52.52 |
38 |
167 |
HPV18 |
E1 |
848 |
866 |
tagccctgttgcgttacaa |
ttgtaacgcaacagggcta |
52.18 |
14 |
168 |
HPV18 |
E1 |
469 |
487 |
ggcaatgtatgtagtggcg |
cgccactacatacattgcc |
52.13 |
40 |
169 |
HPV18 |
E1 |
844 |
862 |
atattagccctgttgcgtt |
aacgcaacagggctaatat |
51.92 |
6 |
170 |
HPV18 |
E1 |
470 |
488 |
gcaatgtatgtagtggcgg |
ccgccactacatacattgc |
51.82 |
30 |
171 |
HPV18 |
E1 |
717 |
735 |
gtgtacagattgggttaca |
tgtaacccaatctgtacac |
51.82 |
45 |
172 |
HPV18 |
E1 |
1900 |
1918 |
gaagatgcagacaccgaag |
cttcggtgtctgcatcttc |
51.76 |
21 |
173 |
HPV18 |
E1 |
477 |
495 |
atgtagtggcggcagtacg |
cgtactgccgccactacat |
51.6 |
42 |
174 |
HPV18 |
E1 |
1875 |
1893 |
cagattagatttgcacgag |
ctcgtgcaaatctaatctg |
51.49 |
27 |
175 |
HPV18 |
E1 |
1248 |
1266 |
caaacattataggcgagcc |
ggctcgcctataatgtttg |
51.41 |
26 |
176 |
HPV18 |
E1 |
435 |
453 |
acagattcaggtaactaca |
tgtagttacctgaatctgt |
51.23 |
48 |
177 |
HPV18 |
E1 |
473 |
491 |
atgtatgtagtggcggcag |
ctgccgccactacatacat |
51.17 |
41 |
178 |
HPV18 |
E1 |
1346 |
1364 |
tagtgcaattcctgcgata |
tatcgcaggaattgcacta |
51.15 |
15 |
179 |
HPV18 |
E1 |
1249 |
1267 |
aaacattataggcgagccc |
gggctcgcctataatgttt |
50.82 |
22 |
180 |
HPV18 |
E1 |
1125 |
1143 |
gctgacagatgaaagcgat |
atcgctttcatctgtcagc |
50.79 |
30 |
181 |
HPV18 |
E1 |
866 |
884 |
aatgtggtaagagtagact |
agtctactcttaccacatt |
50.68 |
40 |
182 |
HPV18 |
E1 |
1903 |
1921 |
gatgcagacaccgaaggaa |
ttccttcggtgtctgcatc |
50.51 |
19 |
183 |
HPV18 |
E1 |
578 |
596 |
atccacaatgtaccatagc |
gctatggtacattgtggat |
50.46 |
39 |
184 |
HPV18 |
E1 |
846 |
864 |
attagccctgttgcgttac |
gtaacgcaacagggctaat |
50.46 |
9 |
185 |
HPV18 |
E1 |
532 |
550 |
agcagtgtagacggtacaa |
ttgtaccgtctacactgct |
50.41 |
7 |
186 |
HPV18 |
E1 |
1898 |
1916 |
aggaagatgcagacaccga |
tcggtgtctgcatcttcct |
50.41 |
30 |
187 |
HPV18 |
E1 |
1129 |
1147 |
acagatgaaagcgatatgg |
ccatatcgctttcatctgt |
50.36 |
7 |
188 |
HPV18 |
E1 |
1584 |
1602 |
agatgatgcaacgaccacg |
cgtggtcgttgcatcatct |
50.33 |
12 |
189 |
HPV18 |
E1 |
1588 |
1606 |
gatgcaacgaccacgtgtt |
aacacgtggtcgttgcatc |
50.21 |
36 |
190 |
HPV18 |
E1 |
845 |
863 |
tattagccctgttgcgtta |
taacgcaacagggctaata |
50.07 |
7 |
191 |
HPV26 |
E1 |
1182 |
1200 |
ctgtgcaaccatgactaga |
tctagtcatggttgcacag |
61.49 |
38 |
192 |
HPV26 |
E1 |
866 |
884 |
atgtgccagaaacgcaatt |
aattgcgtttctggcacat |
56.18 |
8 |
193 |
HPV26 |
E1 |
505 |
523 |
gtggaagatatcgatgtag |
ctacatcgatatcttccac |
55.32 |
14 |
194 |
HPV26 |
E1 |
793 |
811 |
gtactaatgctagtgcgct |
agcgcactagcattagtac |
55.31 |
23 |
195 |
HPV26 |
E1 |
1183 |
1201 |
tgtgcaaccatgactagac |
gtctagtcatggttgcaca |
54.94 |
38 |
196 |
HPV26 |
E1 |
976 |
994 |
acaccagaatggatagtac |
gtactatccattctggtgt |
54.56 |
36 |
197 |
HPV26 |
E1 |
1865 |
1883 |
aacctttgccagcgtttaa |
ttaaacgctggcaaaggtt |
54.35 |
19 |
198 |
HPV26 |
E1 |
53 |
71 |
cagtagaagctatagtgga |
tccactatagcttctactg |
54.21 |
48 |
199 |
HPV26 |
E1 |
663 |
681 |
atgctgttcagattgggtg |
cacccaatctgaacagcat |
54.17 |
48 |
200 |
HPV26 |
E1 |
979 |
997 |
ccagaatggatagtacgac |
gtcgtactatccattctgg |
53.95 |
15 |
201 |
HPV26 |
E1 |
962 |
980 |
agacatatggagatacacc |
ggtgtatctccatatgtct |
53.88 |
45 |
202 |
HPV26 |
E1 |
389 |
407 |
acagcgggtatggctatac |
gtatagccatacccgctgt |
53.58 |
34 |
203 |
HPV26 |
E1 |
977 |
995 |
caccagaatggatagtacg |
cgtactatccattctggtg |
53.51 |
36 |
204 |
HPV26 |
E1 |
980 |
998 |
cagaatggatagtacgaca |
tgtcgtactatccattctg |
53.39 |
10 |
205 |
HPV26 |
E1 |
1864 |
1882 |
gaacctttgccagcgttta |
taaacgctggcaaaggttc |
53.35 |
19 |
206 |
HPV26 |
E1 |
1211 |
1229 |
gagcacagaaacgatctat |
atagatcgtttctgtgctc |
53.09 |
16 |
207 |
HPV26 |
E1 |
503 |
521 |
cagtggaagatatcgatgt |
acatcgatatcttccactg |
53 |
21 |
208 |
HPV26 |
E1 |
197 |
215 |
cattgtttcaggcacaaca |
tgttgtgcctgaaacaatg |
52.33 |
48 |
209 |
HPV26 |
E1 |
391 |
409 |
agcgggtatggctatactg |
cagtatagccatacccgct |
52.14 |
47 |
210 |
HPV26 |
E1 |
1866 |
1884 |
acctttgccagcgtttaaa |
tttaaacgctggcaaaggt |
52.06 |
26 |
211 |
HPV26 |
E1 |
1210 |
1228 |
agagcacagaaacgatcta |
tagatcgtttctgtgctct |
51.91 |
26 |
212 |
HPV26 |
E1 |
864 |
882 |
aaatgtgccagaaacgcaa |
ttgcgtttctggcacattt |
51.71 |
23 |
213 |
HPV26 |
E1 |
628 |
646 |
gcagaactagtacgggtgt |
acacccgtactagttctgc |
51.69 |
18 |
214 |
HPV26 |
E1 |
1863 |
1881 |
agaacctttgccagcgttt |
aaacgctggcaaaggttct |
51.41 |
39 |
215 |
HPV26 |
E1 |
978 |
996 |
accagaatggatagtacga |
tcgtactatccattctggt |
51.34 |
3 |
216 |
HPV26 |
E1 |
390 |
408 |
cagcgggtatggctatact |
agtatagccatacccgctg |
51.24 |
35 |
217 |
HPV26 |
E1 |
116 |
134 |
gtagtgatacagggtcgga |
tccgaccctgtatcactac |
51.22 |
17 |
218 |
HPV26 |
E1 |
865 |
883 |
aatgtgccagaaacgcaat |
attgcgtttctggcacatt |
51.18 |
26 |
219 |
HPV26 |
E1 |
1209 |
1227 |
aagagcacagaaacgatct |
agatcgtttctgtgctctt |
50.99 |
7 |
220 |
HPV26 |
E1 |
794 |
812 |
tactaatgctagtgcgctt |
aagcgcactagcattagta |
50.68 |
13 |
221 |
HPV26 |
E1 |
504 |
522 |
agtggaagatatcgatgta |
tacatcgatatcttccact |
50.52 |
22 |
222 |
HPV26 |
E1 |
792 |
810 |
agtactaatgctagtgcgc |
gcgcactagcattagtact |
50.36 |
5 |
223 |
HPV26 |
E1 |
173 |
191 |
atgcagaacaggaggtaac |
gttacctcctgttctgcat |
50.06 |
45 |
224 |
HPV26 |
E1 |
867 |
885 |
tgtgccagaaacgcaatta |
taattgcgtttctggcaca |
50.04 |
14 |