HPVomics

Predicted highly potential siRNAs (LR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV6	E6	21	39	cacgtctgcaacgaccata	tatggtcgttgcagacgtg	51.91	10
2	HPV6	E6	22	40	acgtctgcaacgaccatag	ctatggtcgttgcagacgt	50.46	45
3	HPV6	E6	24	42	gtctgcaacgaccatagac	gtctatggtcgttgcagac	52.42	39
4	HPV6	E6	25	43	tctgcaacgaccatagacc	ggtctatggtcgttgcaga	53.26	35
5	HPV6	E6	26	44	ctgcaacgaccatagacca	tggtctatggtcgttgcag	51.94	41
6	HPV6	E6	27	45	tgcaacgaccatagaccag	ctggtctatggtcgttgca	50.35	47
7	HPV6	E6	34	52	accatagaccagttgtgca	tgcacaactggtctatggt	56.98	44
8	HPV6	E6	40	58	gaccagttgtgcaagacgt	acgtcttgcacaactggtc	53.06	38
9	HPV6	E6	41	59	accagttgtgcaagacgtt	aacgtcttgcacaactggt	53.42	34
10	HPV6	E6	42	60	ccagttgtgcaagacgttt	aaacgtcttgcacaactgg	53.65	35
11	HPV6	E6	283	301	caagacatcttagacgtgc	gcacgtctaagatgtcttg	50.85	24
12	HPV6	E6	284	302	aagacatcttagacgtgct	agcacgtctaagatgtctt	50.43	14
13	HPV6	E6	285	303	agacatcttagacgtgcta	tagcacgtctaagatgtct	57.9	27
14	HPV6	E6	294	312	agacgtgctaattcggtgc	gcaccgaattagcacgtct	54.01	20
15	HPV6	E6	309	327	gtgctacctgtgtcacaaa	tttgtgacacaggtagcac	50.78	50
16	HPV6	E6	433	451	atggaagacatgttaccct	agggtaacatgtcttccat	57.25	38
17	HPV11	E6	26	44	ctgcaacatctatagacca	tggtctatagatgttgcag	55.85	41
18	HPV11	E6	27	45	tgcaacatctatagaccag	ctggtctatagatgttgca	57.9	47
19	HPV11	E6	34	52	tctatagaccagttgtgca	tgcacaactggtctataga	58.16	44
20	HPV11	E6	40	58	gaccagttgtgcaagacgt	acgtcttgcacaactggtc	53.06	38
21	HPV11	E6	41	59	accagttgtgcaagacgtt	aacgtcttgcacaactggt	53.42	34
22	HPV11	E6	42	60	ccagttgtgcaagacgttt	aaacgtcttgcacaactgg	53.65	35
23	HPV11	E6	79	97	ctgcaaattcagtgcgtgt	acacgcactgaatttgcag	50.3	27
24	HPV11	E6	105	123	gaatgcactgaccaccgca	tgcggtggtcagtgcattc	51.42	42
25	HPV11	E6	152	170	taaaggttgtgtggcgaga	tctcgccacacaaccttta	50.47	26
26	HPV11	E6	154	172	aaggttgtgtggcgagaca	tgtctcgccacacaacctt	53.21	34
27	HPV11	E6	394	412	cagtggaagggtcgttgct	agcaacgacccttccactg	52.07	12
28	HPV11	E6	395	413	agtggaagggtcgttgctt	aagcaacgacccttccact	51.25	19
29	HPV11	E6	433	451	atggaagacttgttaccct	agggtaacaagtcttccat	56.96	38
30	HPV40	E6	1	19	atgtctgcacggtgcggct	agccgcaccgtgcagacat	50.58	9
31	HPV40	E6	62	80	ttacattgcctacgttgca	tgcaacgtaggcaatgtaa	51.29	30
32	HPV40	E6	63	81	tacattgcctacgttgcaa	ttgcaacgtaggcaatgta	50.77	30
33	HPV40	E6	89	107	gtgtgttttgcaagacggt	accgtcttgcaaaacacac	50.93	40
34	HPV40	E6	91	109	gtgttttgcaagacggtcc	ggaccgtcttgcaaaacac	50.37	9
35	HPV40	E6	230	248	gaaactttagatacgcagc	gctgcgtatctaaagtttc	50.87	10
36	HPV40	E6	245	263	cagcctatgcaccaaccgt	acggttggtgcataggctg	53.19	9
37	HPV40	E6	249	267	ctatgcaccaaccgtggaa	ttccacggttggtgcatag	54.25	42
38	HPV42	E6	61	79	gggctgacattgcggaatt	aattccgcaatgtcagccc	50.53	11
39	HPV42	E6	62	80	ggctgacattgcggaattt	aaattccgcaatgtcagcc	50.71	9
40	HPV42	E6	386	404	tattgtgtcagtggacggg	cccgtccactgacacaata	52.34	20
41	HPV42	E6	387	405	attgtgtcagtggacgggt	acccgtccactgacacaat	51.48	32
42	HPV42	E6	388	406	ttgtgtcagtggacgggtc	gacccgtccactgacacaa	51.02	17
43	HPV42	E6	393	411	tcagtggacgggtcggtgt	acaccgacccgtccactga	51.19	21
44	HPV42	E6	394	412	cagtggacgggtcggtgta	tacaccgacccgtccactg	53.88	29
45	HPV42	E6	416	434	attgcagaggacaatgcgt	acgcattgtcctctgcaat	50.84	11
46	HPV42	E6	419	437	gcagaggacaatgcgtgga	tccacgcattgtcctctgc	51.47	36
47	HPV42	E6	421	439	agaggacaatgcgtggaga	tctccacgcattgtcctct	50.56	44
48	HPV42	E6	429	447	atgcgtggagagacgccta	taggcgtctctccacgcat	50.31	28
49	HPV43	E6	74	92	ctactctgcaaattgggtg	cacccaatttgcagagtag	51.76	48
50	HPV43	E6	230	248	ataggcactttgactacgc	gcgtagtcaaagtgcctat	51.16	14
51	HPV43	E6	231	249	taggcactttgactacgca	tgcgtagtcaaagtgccta	51.58	9
52	HPV43	E6	234	252	gcactttgactacgcagca	tgctgcgtagtcaaagtgc	51.14	28
53	HPV43	E6	392	410	gcgtgtggaaaggatactg	cagtatcctttccacacgc	55.98	45
54	HPV44	E6	26	44	ctgcacaaagtatagacca	tggtctatactttgtgcag	59.93	41
55	HPV44	E6	27	45	tgcacaaagtatagaccag	ctggtctatactttgtgca	54.28	47
56	HPV44	E6	34	52	agtatagaccagttgtgca	tgcacaactggtctatact	57.24	44
57	HPV44	E6	153	171	atatgtagtgtaccgagga	tcctcggtacactacatat	52.93	45
58	HPV44	E6	284	302	agtcaattctggacgtgct	agcacgtccagaattgact	51.86	14
59	HPV44	E6	285	303	gtcaattctggacgtgctg	cagcacgtccagaattgac	53.76	27
60	HPV44	E6	328	346	ccattgtgccacgtggaaa	tttccacgtggcacaatgg	55.91	36
61	HPV44	E6	408	426	ctgcttccattgttggaca	tgtccaacaatggaagcag	64.1	48
62	HPV44	E6	428	446	catgcatggaaactatact	agtatagtttccatgcatg	51.85	35
63	HPV44	E6	429	447	atgcatggaaactatacta	tagtatagtttccatgcat	51.09	47
64	HPV44	E6	431	449	gcatggaaactatactacc	ggtagtatagtttccatgc	59.99	44
65	HPV54	E6	136	154	gatttgtgcaaggtatgca	tgcataccttgcacaaatc	50.73	35
66	HPV54	E6	192	210	ttgcaagaagacggtgtgt	acacaccgtcttcttgcaa	50.78	28
67	HPV54	E6	251	269	tggtgtggagacacggctt	aagccgtgtctccacacca	51.76	29
68	HPV54	E6	252	270	ggtgtggagacacggcttt	aaagccgtgtctccacacc	52.38	30
69	HPV54	E6	284	302	gtgcactgtgcctagaact	agttctaggcacagtgcac	55.05	45
70	HPV54	E6	450	468	cgtagattacaacaggcga	tcgcctgttgtaatctacg	50.13	38
71	HPV54	E6	451	469	gtagattacaacaggcgat	atcgcctgttgtaatctac	54.3	23
72	HPV54	E6	455	473	attacaacaggcgattcca	tggaatcgcctgttgtaat	51.63	9
73	HPV54	E6	471	489	ccactgtgttagaggctat	atagcctctaacacagtgg	60.01	48
74	HPV54	E6	485	503	gctattggaagggtaggtg	cacctacccttccaatagc	50.6	39
75	HPV61	E6	32	50	tgctctgcaaggactacga	tcgtagtccttgcagagca	50.92	14
76	HPV61	E6	107	125	cagaagaattgctggcgtt	aacgccagcaattcttctg	50.53	31
77	HPV61	E6	111	129	agaattgctggcgtttgca	tgcaaacgccagcaattct	52.74	23
78	HPV61	E6	163	181	tggccatttggagtatgcg	cgcatactccaaatggcca	51.17	45
79	HPV61	E6	164	182	ggccatttggagtatgcgc	gcgcatactccaaatggcc	53.31	9
80	HPV61	E6	165	183	gccatttggagtatgcgca	tgcgcatactccaaatggc	57.38	2
81	HPV61	E6	166	184	ccatttggagtatgcgcac	gtgcgcatactccaaatgg	58.16	6
82	HPV61	E6	167	185	catttggagtatgcgcacc	ggtgcgcatactccaaatg	55.15	18
83	HPV61	E6	168	186	atttggagtatgcgcacca	tggtgcgcatactccaaat	57.54	26
84	HPV61	E6	169	187	tttggagtatgcgcaccat	atggtgcgcatactccaaa	53.95	26
85	HPV61	E6	181	199	gcaccatgcttggcacgtg	cacgtgccaagcatggtgc	50.85	34
86	HPV61	E6	182	200	caccatgcttggcacgtga	tcacgtgccaagcatggtg	54.6	49
87	HPV61	E6	183	201	accatgcttggcacgtgaa	ttcacgtgccaagcatggt	51.94	49
88	HPV61	E6	184	202	ccatgcttggcacgtgaag	cttcacgtgccaagcatgg	56.92	29
89	HPV61	E6	185	203	catgcttggcacgtgaagt	acttcacgtgccaagcatg	57.06	32
90	HPV61	E6	228	246	ggaccattcctgttacgga	tccgtaacaggaatggtcc	53.37	16
91	HPV61	E6	302	320	atgcatgcagcaaaccgtt	aacggtttgctgcatgcat	53.2	16
92	HPV61	E6	304	322	gcatgcagcaaaccgttaa	ttaacggtttgctgcatgc	55.95	13
93	HPV61	E6	305	323	catgcagcaaaccgttaag	cttaacggtttgctgcatg	53.12	5
94	HPV61	E6	344	362	aggtacaggcatacatcca	tggatgtatgcctgtacct	51.68	47
95	HPV70	E6	19	37	cctgcagaacggccataca	tgtatggccgttctgcagg	52.43	19
96	HPV70	E6	63	81	ggacactacattgcacgac	gtcgtgcaatgtagtgtcc	51.1	27
97	HPV70	E6	223	241	gtaagggaactacggcatt	aatgccgtagttcccttac	51.84	9
98	HPV70	E6	446	464	gcagacgtatacgaagaga	tctcttcgtatacgtctgc	50.68	26
99	HPV72	E6	144	162	gctgcagattgtgtggcgg	ccgccacacaatctgcagc	51.42	20
100	HPV72	E6	146	164	tgcagattgtgtggcggga	tcccgccacacaatctgca	51.3	45
101	HPV72	E6	147	165	gcagattgtgtggcgggac	gtcccgccacacaatctgc	52.68	35
102	HPV72	E6	148	166	cagattgtgtggcgggaca	tgtcccgccacacaatctg	55.01	26
103	HPV72	E6	149	167	agattgtgtggcgggacaa	ttgtcccgccacacaatct	52.45	40
104	HPV72	E6	171	189	gccatttggagtctgcgca	tgcgcagactccaaatggc	54.21	27
105	HPV72	E6	172	190	ccatttggagtctgcgcac	gtgcgcagactccaaatgg	54.44	45
106	HPV72	E6	173	191	catttggagtctgcgcacc	ggtgcgcagactccaaatg	52.71	18
107	HPV72	E6	174	192	atttggagtctgcgcacca	tggtgcgcagactccaaat	55.62	26
108	HPV72	E6	175	193	tttggagtctgcgcaccat	atggtgcgcagactccaaa	53.93	26
109	HPV72	E6	194	212	gccttgcaagagcaactaa	ttagttgctcttgcaaggc	53.47	39
110	HPV72	E6	212	230	aagtgagggagctacgata	tatcgtagctccctcactt	52.77	19
111	HPV72	E6	369	387	cttccacaagataagcgga	tccgcttatcttgtggaag	50.84	6
112	HPV81	E6	8	26	gcacagcagtgatgtcgct	agcgacatcactgctgtgc	52.8	16
113	HPV81	E6	10	28	acagcagtgatgtcgctgg	ccagcgacatcactgctgt	53.11	48
114	HPV81	E6	70	88	tgtgaagtggacctagacg	cgtctaggtccacttcaca	52.27	46
115	HPV81	E6	71	89	gtgaagtggacctagacga	tcgtctaggtccacttcac	52.8	6
116	HPV81	E6	162	180	gctaaacttggtgtggcga	tcgccacaccaagtttagc	50.78	20
117	HPV81	E6	187	205	tggccatttggagtatgcg	cgcatactccaaatggcca	51.17	45
118	HPV81	E6	188	206	ggccatttggagtatgcgc	gcgcatactccaaatggcc	53.31	9
119	HPV81	E6	189	207	gccatttggagtatgcgca	tgcgcatactccaaatggc	57.38	2
120	HPV81	E6	190	208	ccatttggagtatgcgcag	ctgcgcatactccaaatgg	57.65	6
121	HPV81	E6	191	209	catttggagtatgcgcagc	gctgcgcatactccaaatg	54.7	30
122	HPV81	E6	246	264	gcggtggcaatattcgtgc	gcacgaatattgccaccgc	50.79	34
123	HPV81	E6	366	384	tcttgtgacaggcctaatc	gattaggcctgtcacaaga	50.25	29