HPVomics

A therapeutic and epitome resource for Human Papillomaviruses

Predicted highly potential siRNAs (HR-HPVs)

---

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV16	L1	479	497	gttgcaaaccacctatagg	cctataggtggtttgcaac	59	46
2	HPV16	L1	480	498	ttgcaaaccacctataggg	ccctataggtggtttgcaa	57.19	41
3	HPV16	L1	109	127	gcaggaacatccagactac	gtagtctggatgttcctgc	56.76	41
4	HPV16	L1	326	344	gtggtcagccattaggtgt	acacctaatggctgaccac	55.31	39
5	HPV16	L1	122	140	gactacttgcagttggaca	tgtccaactgcaagtagtc	55.02	48
6	HPV16	L1	72	90	ggatgaatatgttgcacgc	gcgtgcaacatattcatcc	54.9	19
7	HPV16	L1	76	94	gaatatgttgcacgcacaa	ttgtgcgtgcaacatattc	54.7	30
8	HPV16	L1	713	731	tgtcagaaccatatggcga	tcgccatatggttctgaca	53.9	3
9	HPV16	L1	482	500	gcaaaccacctatagggga	tcccctataggtggtttgc	53.88	42
10	HPV16	L1	126	144	acttgcagttggacatccc	gggatgtccaactgcaagt	53.81	44
11	HPV16	L1	715	733	tcagaaccatatggcgaca	tgtcgccatatggttctga	53.57	20
12	HPV16	L1	718	736	gaaccatatggcgacagct	agctgtcgccatatggttc	53.55	34
13	HPV16	L1	965	983	gcatttgttggggtaacca	tggttaccccaacaaatgc	53.34	41
14	HPV16	L1	1153	1171	gcagacgttatgacataca	tgtatgtcataacgtctgc	53.28	49
15	HPV16	L1	325	343	cgtggtcagccattaggtg	cacctaatggctgaccacg	53.11	37
16	HPV16	L1	1143	1161	aaccttaactgcagacgtt	aacgtctgcagttaaggtt	52.98	36
17	HPV16	L1	714	732	gtcagaaccatatggcgac	gtcgccatatggttctgac	52.94	22
18	HPV16	L1	73	91	gatgaatatgttgcacgca	tgcgtgcaacatattcatc	52.9	23
19	HPV16	L1	932	950	attggttacaacgagcaca	tgtgctcgttgtaaccaat	52.88	35
20	HPV16	L1	129	147	tgcagttggacatccctat	atagggatgtccaactgca	52.8	48
21	HPV16	L1	1081	1099	aaggagtacctacgacatg	catgtcgtaggtactcctt	52.64	11
22	HPV16	L1	1144	1162	accttaactgcagacgtta	taacgtctgcagttaaggt	52.43	35
23	HPV16	L1	60	78	ggttgtaagcacggatgaa	ttcatccgtgcttacaacc	51.84	25
24	HPV16	L1	717	735	agaaccatatggcgacagc	gctgtcgccatatggttct	51.35	43
25	HPV16	L1	1406	1424	tactacaagcaggattgaa	ttcaatcctgcttgtagta	51.3	45
26	HPV16	L1	1145	1163	ccttaactgcagacgttat	ataacgtctgcagttaagg	51.25	12
27	HPV16	L1	1142	1160	taaccttaactgcagacgt	acgtctgcagttaaggtta	50.96	21
28	HPV16	L1	803	821	gtgaaaatgtaccagacga	tcgtctggtacattttcac	50.82	31
29	HPV16	L1	59	77	aggttgtaagcacggatga	tcatccgtgcttacaacct	50.8	32
30	HPV16	L1	295	313	gtttgggcctgtgtaggtg	cacctacacaggcccaaac	50.69	50
31	HPV16	L1	1364	1382	tttctgcagacctagatca	tgatctaggtctgcagaaa	50.65	42
32	HPV31	L1	935	953	attggatgcaacgtgctca	tgagcacgttgcatccaat	54.2	42
33	HPV31	L1	720	738	tgagccatatggcgataca	tgtatcgccatatggctca	53.6	6
34	HPV31	L1	931	949	ccatattggatgcaacgtg	cacgttgcatccaatatgg	53.21	25
35	HPV31	L1	1479	1497	cactacaccagcaaaacgt	acgttttgctggtgtagtg	53.14	26
36	HPV31	L1	1467	1485	ctcagcatctaccactaca	tgtagtggtagatgctgag	51.35	45
37	HPV31	L1	721	739	gagccatatggcgatacat	atgtatcgccatatggctc	51.06	13
38	HPV31	L1	72	90	ggatgaatatgtaacacga	tcgtgttacatattcatcc	50.72	26
39	HPV31	L1	122	140	ggctgcttacagtaggcca	tggcctactgtaagcagcc	50.34	44
40	HPV31	L1	1	19	atgtctctgtggcggccta	taggccgccacagagacat	50.29	39
41	HPV33	L1	997	1015	gtggtagataccactcgca	tgcgagtggtatctaccac	57.66	31
42	HPV33	L1	276	294	taaccctgatacacaacga	tcgttgtgtatcagggtta	55.03	12
43	HPV33	L1	73	91	gatgaatatgtgtctcgca	tgcgagacacatattcatc	54.79	18
44	HPV33	L1	519	537	tgttgcttgtactaatgca	tgcattagtacaagcaaca	54.32	47
45	HPV33	L1	999	1017	ggtagataccactcgcagt	actgcgagtggtatctacc	53.88	25
46	HPV33	L1	928	946	ccatattggctacaacgtg	cacgttgtagccaatatgg	53.75	15
47	HPV33	L1	932	950	attggctacaacgtgcaca	tgtgcacgttgtagccaat	53.65	25
48	HPV33	L1	334	352	cagccattaggcgttggca	tgccaacgcctaatggctg	52.76	24
49	HPV33	L1	1000	1018	gtagataccactcgcagta	tactgcgagtggtatctac	52.54	18
50	HPV33	L1	278	296	accctgatacacaacgatt	aatcgttgtgtatcagggt	52.33	14
51	HPV33	L1	1002	1020	agataccactcgcagtact	agtactgcgagtggtatct	52.33	42
52	HPV33	L1	76	94	gaatatgtgtctcgcacaa	ttgtgcgagacacatattc	52.18	18
53	HPV33	L1	277	295	aaccctgatacacaacgat	atcgttgtgtatcagggtt	51.32	12
54	HPV33	L1	969	987	ttgttggggcaatcaggta	tacctgattgccccaacaa	51.27	50
55	HPV33	L1	280	298	cctgatacacaacgattag	ctaatcgttgtgtatcagg	51.26	16
56	HPV33	L1	288	306	acaacgattagtatgggca	tgcccatactaatcgttgt	51.18	46
57	HPV33	L1	996	1014	tgtggtagataccactcgc	gcgagtggtatctaccaca	51.04	35
58	HPV33	L1	930	948	atattggctacaacgtgca	tgcacgttgtagccaatat	51.03	31
59	HPV33	L1	299	317	tatgggcatgtgtaggcct	aggcctacacatgcccata	50.43	44
60	HPV33	L1	1220	1238	ctcctccatctgctagttt	aaactagcagatggaggag	50.42	45
61	HPV33	L1	200	218	caggcttgcaatatagggt	accctatattgcaagcctg	50.35	27
62	HPV33	L1	929	947	catattggctacaacgtgc	gcacgttgtagccaatatg	50.11	25
63	HPV33	L1	279	297	ccctgatacacaacgatta	taatcgttgtgtatcaggg	50.01	16
64	HPV35	L1	844	862	ggcacattgcctagtacta	tagtactaggcaatgtgcc	58.96	41
65	HPV35	L1	124	142	ctattagctgtgggtcacc	ggtgacccacagctaatag	58.64	50
66	HPV35	L1	842	860	ctggcacattgcctagtac	gtactaggcaatgtgccag	57.74	49
67	HPV35	L1	331	349	cagccattgggtgtaggta	tacctacacccaatggctg	57.37	50
68	HPV35	L1	843	861	tggcacattgcctagtact	agtactaggcaatgtgcca	56.78	24
69	HPV35	L1	329	347	gtcagccattgggtgtagg	cctacacccaatggctgac	56.65	43
70	HPV35	L1	332	350	agccattgggtgtaggtat	atacctacacccaatggct	56.36	45
71	HPV35	L1	811	829	gtacctgcagacctatata	tatataggtctgcaggtac	56.18	41
72	HPV35	L1	328	346	ggtcagccattgggtgtag	ctacacccaatggctgacc	55.4	34
73	HPV35	L1	133	151	gtgggtcacccatactatg	catagtatgggtgacccac	54.89	49
74	HPV35	L1	519	537	accttgtaatgctaaccag	ctggttagcattacaaggt	54.76	48
75	HPV35	L1	130	148	gctgtgggtcacccatact	agtatgggtgacccacagc	54.65	32
76	HPV35	L1	333	351	gccattgggtgtaggtatt	aatacctacacccaatggc	54.36	41
77	HPV35	L1	958	976	ggtatttgttggagtaacc	ggttactccaacaaatacc	53.51	33
78	HPV35	L1	518	536	caccttgtaatgctaacca	tggttagcattacaaggtg	53.24	50
79	HPV35	L1	310	328	ggagttgaagtaggtcgtg	cacgacctacttcaactcc	52.97	27
80	HPV35	L1	325	343	cgtggtcagccattgggtg	cacccaatggctgaccacg	52.94	48
81	HPV35	L1	312	330	agttgaagtaggtcgtggt	accacgacctacttcaact	52.69	47
82	HPV35	L1	846	864	cacattgcctagtactagt	actagtactaggcaatgtg	52.59	40
83	HPV35	L1	485	503	ggcctcctataggtgaaca	tgttcacctataggaggcc	52.38	46
84	HPV35	L1	922	940	ccatattggttgcaacgtg	cacgttgcaaccaatatgg	51.94	25
85	HPV35	L1	311	329	gagttgaagtaggtcgtgg	ccacgacctacttcaactc	51.67	29
86	HPV35	L1	132	150	tgtgggtcacccatactat	atagtatgggtgacccaca	51.62	35
87	HPV35	L1	313	331	gttgaagtaggtcgtggtc	gaccacgacctacttcaac	51.54	44
88	HPV35	L1	113	131	gcagttctaggctattagc	gctaatagcctagaactgc	51.18	40
89	HPV35	L1	125	143	tattagctgtgggtcaccc	gggtgacccacagctaata	50.87	50
90	HPV35	L1	880	898	agtggctctatggtaacct	aggttaccatagagccact	50.87	41
91	HPV35	L1	73	91	gatgaatatgtaacacgca	tgcgtgttacatattcatc	50.68	19
92	HPV35	L1	926	944	attggttgcaacgtgcaca	tgtgcacgttgcaaccaat	50.64	25
93	HPV35	L1	888	906	tatggtaacctccgatgca	tgcatcggaggttaccata	50.57	31
94	HPV35	L1	1	19	atgtctctgtggcggtcta	tagaccgccacagagacat	50.49	10
95	HPV35	L1	964	982	tgttggagtaaccaattgt	acaattggttactccaaca	50.46	40
96	HPV35	L1	89	107	gcacaaacatctactatca	tgatagtagatgtttgtgc	50.33	31
97	HPV35	L1	309	327	aggagttgaagtaggtcgt	acgacctacttcaactcct	50.32	2
98	HPV35	L1	181	199	gcagtacccaaggtatctg	cagataccttgggtactgc	50.2	47
99	HPV35	L1	575	593	acactgtactacaagacgg	ccgtcttgtagtacagtgt	50.07	38
100	HPV18	L1	997	1015	gtggtagataccactcgca	tgcgagtggtatctaccac	57.66	31
101	HPV18	L1	783	801	gaatagagcaggtactatg	catagtacctgctctattc	56.36	41
102	HPV18	L1	836	854	gcacaggtatgcgtgcttc	gaagcacgcatacctgtgc	55.82	35
103	HPV18	L1	632	650	gtacattgcaagatactaa	ttagtatcttgcaatgtac	54.68	47
104	HPV18	L1	835	853	ggcacaggtatgcgtgctt	aagcacgcatacctgtgcc	54.29	35
105	HPV18	L1	999	1017	ggtagataccactcgcagt	actgcgagtggtatctacc	53.88	25
106	HPV18	L1	310	328	ggagtggaaattggccgtg	cacggccaatttccactcc	53.5	29
107	HPV18	L1	1410	1428	ggttcaggctggattgcgt	acgcaatccagcctgaacc	53.13	8
108	HPV18	L1	1411	1429	gttcaggctggattgcgtc	gacgcaatccagcctgaac	53.11	7
109	HPV18	L1	309	327	tggagtggaaattggccgt	acggccaatttccactcca	53.06	48
110	HPV18	L1	1462	1480	gctccatctgccactacgt	acgtagtggcagatggagc	52.93	9
111	HPV18	L1	76	94	gattatgtgactcgcacaa	ttgtgcgagtcacataatc	52.69	18
112	HPV18	L1	313	331	gtggaaattggccgtggtc	gaccacggccaatttccac	52.6	38
113	HPV18	L1	1000	1018	gtagataccactcgcagta	tactgcgagtggtatctac	52.54	18
114	HPV18	L1	881	899	ctccaagtggctctattgt	acaatagagccacttggag	51.97	43
115	HPV18	L1	1414	1432	caggctggattgcgtcgca	tgcgacgcaatccagcctg	51.73	11
116	HPV18	L1	12	30	gcggcctagtgacaatacc	ggtattgtcactaggccgc	51.51	38
117	HPV18	L1	618	636	tgccatggactttagtaca	tgtactaaagtccatggca	51.32	27
118	HPV18	L1	996	1014	tgtggtagataccactcgc	gcgagtggtatctaccaca	51.04	35
119	HPV18	L1	314	332	tggaaattggccgtggtca	tgaccacggccaatttcca	50.88	40
120	HPV18	L1	326	344	gtggtcagcctttaggtgt	acacctaaaggctgaccac	50.79	39
121	HPV18	L1	760	778	cagctttttgctaggcatt	aatgcctagcaaaaagctg	50.66	36
122	HPV18	L1	515	533	gcactgcttgtaaatcgcg	cgcgatttacaagcagtgc	50.28	7
123	HPV18	L1	15	33	gcctagtgacaataccgta	tacggtattgtcactaggc	50.15	9
124	HPV26	L1	575	593	gcattattgaggatggcga	tcgccatcctcaataatgc	56.19	32
125	HPV26	L1	874	892	tctgctacacctagtggct	agccactaggtgtagcaga	54.76	40
126	HPV26	L1	208	226	agggtatttagagtgcacc	ggtgcactctaaataccct	54.25	45
127	HPV26	L1	1226	1244	tacctcccactgctagttt	aaactagcagtgggaggta	53.49	45
128	HPV26	L1	1276	1294	gctactacctgtcagcgta	tacgctgacaggtagtagc	53.49	37
129	HPV26	L1	796	814	gttggggatgctataccca	tgggtatagcatccccaac	53.35	50
130	HPV26	L1	1275	1293	tgctactacctgtcagcgt	acgctgacaggtagtagca	52.84	28
131	HPV26	L1	324	342	aggacagccattaggcatt	aatgcctaatggctgtcct	52.78	36
132	HPV26	L1	1380	1398	ggatcaatttccactaggg	ccctagtggaaattgatcc	52.68	50
133	HPV26	L1	628	646	actgccttacaggctacca	tggtagcctgtaaggcagt	52.38	41
134	HPV26	L1	1381	1399	gatcaatttccactagggc	gccctagtggaaattgatc	52.18	44
135	HPV26	L1	1000	1018	gttgataccacccgcagta	tactgcgggtggtatcaac	52.15	18
136	HPV26	L1	73	91	gatgaatatgtaactcgca	tgcgagttacatattcatc	52.14	17
137	HPV26	L1	342	360	tggccttagtggacatcct	aggatgtccactaaggcca	51.8	44
138	HPV26	L1	879	897	tacacctagtggctctatg	catagagccactaggtgta	51.79	48
139	HPV26	L1	794	812	ctgttggggatgctatacc	ggtatagcatccccaacag	51.48	35
140	HPV26	L1	81	99	tgtaactcgcaccggcata	tatgccggtgcgagttaca	51.44	33
141	HPV26	L1	20	38	gtgacagcaaggtatatct	agatataccttgctgtcac	51.35	46
142	HPV26	L1	999	1017	tgttgataccacccgcagt	actgcgggtggtatcaaca	51.28	40
143	HPV26	L1	871	889	tattctgctacacctagtg	cactaggtgtagcagaata	51.08	50
144	HPV26	L1	1243	1261	ttggaagatgcctataggt	acctataggcatcttccaa	51.02	41
145	HPV26	L1	72	90	ggatgaatatgtaactcgc	gcgagttacatattcatcc	50.84	24
146	HPV26	L1	580	598	attgaggatggcgatatga	tcatatcgccatcctcaat	50.44	7
147	HPV26	L1	107	125	atgcgggcagctctcgttt	aaacgagagctgcccgcat	50.31	28
148	HPV26	L1	964	982	ggtatctgttggggcaatc	gattgccccaacagatacc	50.29	49
149	HPV26	L1	1407	1425	tatgttacaggccggcata	tatgccggcctgtaacata	50.22	33
150	HPV26	L1	1384	1402	caatttccactagggcgta	tacgccctagtggaaattg	50.21	14
151	HPV26	L1	79	97	tatgtaactcgcaccggca	tgccggtgcgagttacata	50.18	42
152	HPV26	L1	49	67	cctgtgtctcgggttgtca	tgacaacccgagacacagg	50.15	45
153	HPV26	L1	187	205	aaggtatctgcctatcagt	actgataggcagatacctt	50.14	49
154	HPV26	L1	3	21	ggctttgtggcgtactagt	actagtacgccacaaagcc	50.08	40
155	HPV26	L1	305	323	ttggtgttgaagttggtag	ctaccaacttcaacaccaa	50.08	47
156	HPV26	L1	1410	1428	gttacaggccggcatacaa	ttgtatgccggcctgtaac	50.01	42