HPVomics

Predicted highly potential siRNAs (LR-HPVs)

S.No.	HPV type	HPV target region	Start position	End position	Sense	Antisense	Inhibition (%)	Off-target (seed)
1	HPV44	L2	491	509	catctgttgtacagtcgca	tgcgactgtacaacagatg	58.28	22
2	HPV44	L2	32	50	gtgcatctgctacccaatt	aattgggtagcagatgcac	57.57	48
3	HPV44	L2	811	829	gaacctccagatgatgcgt	acgcatcatctggaggttc	55.58	12
4	HPV44	L2	845	863	gattgcacagaccggctat	atagccggtctgtgcaatc	55.54	20
5	HPV44	L2	261	279	cgcaaggccacctatactt	aagtataggtggccttgcg	55.1	47
6	HPV44	L2	493	511	tctgttgtacagtcgcagc	gctgcgactgtacaacaga	54.72	40
7	HPV44	L2	485	503	ctgacccatctgttgtaca	tgtacaacagatgggtcag	54.33	49
8	HPV44	L2	490	508	ccatctgttgtacagtcgc	gcgactgtacaacagatgg	54.33	29
9	HPV44	L2	891	909	tagtagaattggacaacga	tcgttgtccaattctacta	53.84	13
10	HPV44	L2	1364	1382	ttgcagatgtggcggccta	taggccgccacatctgcaa	53.57	39
11	HPV44	L2	1233	1251	cactacaactccctatagt	actatagggagttgtagtg	53.33	46
12	HPV44	L2	260	278	ccgcaaggccacctatact	agtataggtggccttgcgg	53.26	32
13	HPV44	L2	846	864	attgcacagaccggctata	tatagccggtctgtgcaat	52.85	12
14	HPV44	L2	1146	1164	cccatggggcaatactact	agtagtattgccccatggg	52.1	44
15	HPV44	L2	1319	1337	catggtattttgcacgcaa	ttgcgtgcaaaataccatg	51.76	28
16	HPV44	L2	893	911	gtagaattggacaacgagg	cctcgttgtccaattctac	51.65	20
17	HPV44	L2	661	679	ccgcgtattggcctataca	tgtataggccaatacgcgg	51.52	32
18	HPV44	L2	812	830	aacctccagatgatgcgtt	aacgcatcatctggaggtt	51.44	26
19	HPV44	L2	1221	1239	tcctactgcatccactaca	tgtagtggatgcagtagga	51.04	45
20	HPV44	L2	1232	1250	ccactacaactccctatag	ctatagggagttgtagtgg	50.94	36
21	HPV44	L2	492	510	atctgttgtacagtcgcag	ctgcgactgtacaacagat	50.89	28
22	HPV44	L2	521	539	aagctggtggccacatact	agtatgtggccaccagctt	50.71	50
23	HPV44	L2	848	866	tgcacagaccggctataca	tgtatagccggtctgtgca	50.64	35
24	HPV44	L2	892	910	agtagaattggacaacgag	ctcgttgtccaattctact	50.44	12
25	HPV44	L2	814	832	cctccagatgatgcgttta	taaacgcatcatctggagg	50.32	22
26	HPV44	L2	29	47	aacgtgcatctgctaccca	tgggtagcagatgcacgtt	50.24	35
27	HPV44	L2	494	512	ctgttgtacagtcgcagcc	ggctgcgactgtacaacag	50.15	46
28	HPV11	L2	566	584	tagaagacattccactaga	tctagtggaatgtcttcta	59.49	36
29	HPV11	L2	843	861	acatagaccagctataacg	cgttatagctggtctatgt	58.41	32
30	HPV11	L2	607	625	gatagtggacctacatcca	tggatgtaggtccactatc	57.97	47
31	HPV11	L2	1048	1066	gaaccatttgaccctatcc	ggatagggtcaaatggttc	56.49	47
32	HPV11	L2	847	865	agaccagctataacgtcca	tggacgttatagctggtct	56.25	25
33	HPV11	L2	1305	1323	atggtactttgcacgcaga	tctgcgtgcaaagtaccat	54.27	26
34	HPV11	L2	1047	1065	tgaaccatttgaccctatc	gatagggtcaaatggttca	54.1	44
35	HPV11	L2	1046	1064	ctgaaccatttgaccctat	atagggtcaaatggttcag	54.05	43
36	HPV11	L2	1349	1367	ttacagatgtggcggccta	taggccgccacatctgtaa	53.62	39
37	HPV11	L2	928	946	caacatataggtgcccgca	tgcgggcacctatatgttg	53.31	40
38	HPV11	L2	849	867	accagctataacgtccaga	tctggacgttatagctggt	53.19	42
39	HPV11	L2	515	533	aggccagtggtcacatact	agtatgtgaccactggcct	53.13	50
40	HPV11	L2	663	681	gggtttgtatagtcgtgcc	ggcacgactatacaaaccc	53.13	14
41	HPV11	L2	1304	1322	catggtactttgcacgcag	ctgcgtgcaaagtaccatg	53.08	28
42	HPV11	L2	842	860	tacatagaccagctataac	gttatagctggtctatgta	52.94	49
43	HPV11	L2	906	924	gtccatgtacacacgcagt	actgcgtgtgtacatggac	52.79	26
44	HPV11	L2	927	945	acaacatataggtgcccgc	gcgggcacctatatgttgt	52.44	35
45	HPV11	L2	200	218	gtgcagggtatataccctt	aagggtatataccctgcac	52.23	28
46	HPV11	L2	228	246	tcccaagcctgctattact	agtaatagcaggcttggga	52.22	43
47	HPV11	L2	3	21	gaaacctagggcacgcaga	tctgcgtgccctaggtttc	52.19	26
48	HPV11	L2	920	938	gcagtggacaacatatagg	cctatatgttgtccactgc	51.76	48
49	HPV11	L2	999	1017	actgcaccctctagtggct	agccactagagggtgcagt	51.43	40
50	HPV11	L2	660	678	ggtgggtttgtatagtcgt	acgactatacaaacccacc	51.29	10
51	HPV11	L2	661	679	gtgggtttgtatagtcgtg	cacgactatacaaacccac	51.25	14
52	HPV11	L2	930	948	acatataggtgcccgcata	tatgcgggcacctatatgt	51.11	9
53	HPV11	L2	664	682	ggtttgtatagtcgtgcct	aggcacgactatacaaacc	50.7	35
54	HPV11	L2	844	862	catagaccagctataacgt	acgttatagctggtctatg	50.35	3
55	HPV11	L2	786	804	tacccatgagtctatccac	gtggatagactcatgggta	50.33	44
56	HPV11	L2	1	19	atgaaacctagggcacgca	tgcgtgccctaggtttcat	50.32	33
57	HPV11	L2	199	217	cgtgcagggtatataccct	agggtatataccctgcacg	50.32	50
58	HPV11	L2	845	863	atagaccagctataacgtc	gacgttatagctggtctat	50.32	9
59	HPV11	L2	846	864	tagaccagctataacgtcc	ggacgttatagctggtcta	50.25	5
60	HPV11	L2	194	212	gcggtcgtgcagggtatat	atataccctgcacgaccgc	50.06	28
61	HPV42	L2	981	999	tcatgaccttagccctatt	aatagggctaaggtcatga	56.52	49
62	HPV42	L2	984	1002	tgaccttagccctattaca	tgtaatagggctaaggtca	56.25	43
63	HPV42	L2	524	542	cattgccagcagaggttaa	ttaacctctgctggcaatg	55.37	50
64	HPV42	L2	892	910	cagggtagtgtacgtgtta	taacacgtacactaccctg	54.18	26
65	HPV42	L2	927	945	gctgtctatgcagacacgt	acgtgtctgcatagacagc	53.99	37
66	HPV42	L2	261	279	agtacgcccaccaatagct	agctattggtgggcgtact	52.98	38
67	HPV42	L2	1142	1160	tgcatggttttgctacccc	ggggtagcaaaaccatgca	52.88	35
68	HPV42	L2	1409	1427	ttgcagatgtccgtgtggc	gccacacggacatctgcaa	52.34	28
69	HPV42	L2	692	710	attctagagcaacgcaaca	tgttgcgttgctctagaat	52.3	8
70	HPV42	L2	272	290	caatagctgttgacaccgt	acggtgtcaacagctattg	52.2	30
71	HPV42	L2	1408	1426	tttgcagatgtccgtgtgg	ccacacggacatctgcaaa	52.12	46
72	HPV42	L2	260	278	cagtacgcccaccaatagc	gctattggtgggcgtactg	52.07	39
73	HPV42	L2	891	909	acagggtagtgtacgtgtt	aacacgtacactaccctgt	52.02	31
74	HPV42	L2	509	527	ttacattgcagccgccatt	aatggcggctgcaatgtaa	51.11	45
75	HPV42	L2	1326	1344	ctttgtaatggtatcagga	tcctgataccattacaaag	51.08	50
76	HPV42	L2	893	911	agggtagtgtacgtgttag	ctaacacgtacactaccct	50.98	24
77	HPV42	L2	690	708	atattctagagcaacgcaa	ttgcgttgctctagaatat	50.79	19
78	HPV42	L2	691	709	tattctagagcaacgcaac	gttgcgttgctctagaata	50.45	26
79	HPV42	L2	1411	1429	gcagatgtccgtgtggcgg	ccgccacacggacatctgc	50.08	20
80	HPV42	L2	764	782	cagtgtttgagaacgtgga	tccacgttctcaaacactg	57.29	46
81	HPV42	L2	263	281	ctgacgttgttgctaggcc	ggcctagcaacaacgtcag	56.06	50
82	HPV42	L2	766	784	gtgtttgagaacgtggatg	catccacgttctcaaacac	55.46	43
83	HPV42	L2	1191	1209	catacctcttgccacggtt	aaccgtggcaagaggtatg	55.37	24
84	HPV42	L2	1008	1026	attgcaccctctagtggcc	ggccactagagggtgcaat	55.1	40
85	HPV42	L2	1041	1059	actggagacaccacataca	tgtatgtggtgtctccagt	54.8	50
86	HPV42	L2	548	566	gcctcatagtgtcgcattc	gaatgcgacactatgaggc	53.68	10
87	HPV42	L2	1045	1063	gagacaccacatacactag	ctagtgtatgtggtgtctc	53.44	49
88	HPV42	L2	1367	1385	gaaagcgcatattagcaca	tgtgctaatatgcgctttc	53.4	47
89	HPV42	L2	763	781	ccagtgtttgagaacgtgg	ccacgttctcaaacactgg	53.23	42
90	HPV42	L2	805	823	ccatccatacatgacgctc	gagcgtcatgtatggatgg	53.09	18
91	HPV42	L2	296	314	atactgttgcaccctccga	tcggagggtgcaacagtat	53.03	45
92	HPV42	L2	1254	1272	tattcctgcaggtacacca	tggtgtacctgcaggaata	52.97	34
93	HPV42	L2	88	106	gatgttgttcataaggtgg	ccaccttatgaacaacatc	52.86	49
94	HPV42	L2	105	123	ggagcaaacaaccgttgca	tgcaacggttgtttgctcc	52.6	22
95	HPV42	L2	1253	1271	ctattcctgcaggtacacc	ggtgtacctgcaggaatag	52.17	30
96	HPV42	L2	762	780	tccagtgtttgagaacgtg	cacgttctcaaacactgga	51.66	30
97	HPV42	L2	858	876	caggcctgcattaacgtct	agacgttaatgcaggcctg	51.58	5
98	HPV42	L2	1192	1210	atacctcttgccacggttt	aaaccgtggcaagaggtat	51.49	22
99	HPV42	L2	1334	1352	atttgcatcctgcatacta	tagtatgcaggatgcaaat	51.15	31
100	HPV42	L2	630	648	attgtccagtacacccgtt	aacgggtgtactggacaat	50.8	29
101	HPV42	L2	676	694	ggactgtacagtaaggcct	aggccttactgtacagtcc	50.75	44
102	HPV42	L2	1043	1061	tggagacaccacatacact	agtgtatgtggtgtctcca	50.75	46
103	HPV42	L2	1102	1120	tatgcagacatggatacta	tagtatccatgtctgcata	50.74	45
104	HPV42	L2	169	187	cttggcataggttccggct	agccggaacctatgccaag	50.46	14
105	HPV42	L2	761	779	atccagtgtttgagaacgt	acgttctcaaacactggat	50.4	44
106	HPV42	L2	168	186	gcttggcataggttccggc	gccggaacctatgccaagc	50.18	31
107	HPV42	L2	806	824	catccatacatgacgctcc	ggagcgtcatgtatggatg	50.12	21
108	HPV42	L2	1190	1208	ccatacctcttgccacggt	accgtggcaagaggtatgg	50.12	39
109	HPV43	L2	708	726	ggaaattgttgaccctaca	tgtagggtcaacaatttcc	59.04	44
110	HPV43	L2	707	725	tggaaattgttgaccctac	gtagggtcaacaatttcca	56.19	43
111	HPV43	L2	1006	1024	atagaattgcagcccctag	ctaggggctgcaattctat	56.17	29
112	HPV43	L2	105	123	tgagcatactacaatagca	tgctattgtagtatgctca	55.04	38
113	HPV43	L2	704	722	aggtggaaattgttgaccc	gggtcaacaatttccacct	53.94	30
114	HPV43	L2	199	217	ggcagaacaggctatgtcc	ggacatagcctgttctgcc	53.69	50
115	HPV43	L2	1370	1388	cagataactatgtggcggc	gccgccacatagttatctg	53.39	47
116	HPV43	L2	864	882	acctgcattaacatcccga	tcgggatgttaatgcaggt	52.55	24
117	HPV43	L2	572	590	ctgttactgctgatagtgc	gcactatcagcagtaacag	52.18	50
118	HPV43	L2	1373	1391	ataactatgtggcggctta	taagccgccacatagttat	51.63	9
119	HPV43	L2	1175	1193	ttgcaactgtacctgatat	atatcaggtacagttgcaa	51.39	30
120	HPV43	L2	29	47	aacgggcatcagctacaca	tgtgtagctgatgcccgtt	50.92	36
121	HPV43	L2	102	120	ggttgagcatactacaata	tattgtagtatgctcaacc	50.88	50
122	HPV43	L2	392	410	atggtggctttgaggtaac	gttacctcaaagccaccat	50.72	45
123	HPV43	L2	238	256	ggtattgtccctaaggtga	tcaccttagggacaatacc	50.68	49
124	HPV43	L2	624	642	cagcgatcctaccactagc	gctagtggtaggatcgctg	50.52	36
125	HPV43	L2	347	365	caagcataattcagtccgg	ccggactgaattatgcttg	50.51	24
126	HPV43	L2	99	117	taaggttgagcatactaca	tgtagtatgctcaacctta	50.49	44
127	HPV43	L2	1011	1029	attgcagcccctaggacgt	acgtcctaggggctgcaat	50.42	3
128	HPV43	L2	625	643	agcgatcctaccactagca	tgctagtggtaggatcgct	50.38	36
129	HPV43	L2	626	644	gcgatcctaccactagcac	gtgctagtggtaggatcgc	50.27	44
130	HPV43	L2	678	696	gggcctgtacagtaaggca	tgccttactgtacaggccc	50.14	26
131	HPV6	L2	767	785	gggaggatgttagtgtaca	tgtacactaacatcctccc	59.75	48
132	HPV6	L2	97	115	cctaaggtggagcacaaca	tgttgtgctccaccttagg	58.16	48
133	HPV6	L2	206	224	ctggctatgttcccttaca	tgtaagggaacatagccag	55.44	38
134	HPV6	L2	907	925	gggtctatgcacactcgca	tgcgagtgtgcatagaccc	53.15	31
135	HPV6	L2	482	500	cagaaccttctgtaacaca	tgtgttacagaaggttctg	53.02	47
136	HPV6	L2	610	628	gatagcggtcctacatcca	tggatgtaggaccgctatc	52.43	47
137	HPV6	L2	764	782	aaggggaggatgttagtgt	acactaacatcctcccctt	51.92	42
138	HPV6	L2	877	895	cttgtgcggtacagtcgca	tgcgactgtaccgcacaag	51.78	22
139	HPV6	L2	869	887	gacgtggccttgtgcggta	taccgcacaaggccacgtc	51.61	13
140	HPV6	L2	554	572	taacgtcacaccctataga	tctatagggtgtgacgtta	51.6	46
141	HPV6	L2	880	898	gtgcggtacagtcgcattg	caatgcgactgtaccgcac	51.13	10
142	HPV6	L2	720	738	ttccactcctcaacgctta	taagcgttgaggagtggaa	50.94	27
143	HPV6	L2	879	897	tgtgcggtacagtcgcatt	aatgcgactgtaccgcaca	50.82	8
144	HPV6	L2	666	684	gggcctatatagtcgtgca	tgcacgactatataggccc	50.75	14
145	HPV6	L2	909	927	gtctatgcacactcgcagc	gctgcgagtgtgcatagac	50.67	25
146	HPV6	L2	1116	1134	aacttccacacctaataca	tgtattaggtgtggaagtt	50.23	40
147	HPV6	L2	553	571	gtaacgtcacaccctatag	ctatagggtgtgacgttac	50.16	36
148	HPV54	L2	105	123	agagggtacaactatagca	tgctatagttgtaccctct	54.89	50
149	HPV54	L2	395	413	catctagtgatgctacccc	ggggtagcatcactagatg	53.79	35
150	HPV54	L2	275	293	ctgtagaaacagtagcacc	ggtgctactgtttctacag	53.38	45
151	HPV54	L2	175	193	ataggtactggtagtggca	tgccactaccagtacctat	51.93	40
152	HPV54	L2	214	232	ataccacttggacgaccct	agggtcgtccaagtggtat	51.25	9