HPVomics

A therapeutic and epitome resource for Human Papillomaviruses

Efficient putative sgRNAs (CRISPR/Cas9 targets)

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S.No.	HPV type	Target region	sgRNA seuences	PAM	Strand(F/R)	Start	End	GC (%)	Predicted effeciency (%)
1	HPV16	E5	GTAGACACAGACAAAAGCAG	CGG	R	140	159	45	75.42
2	HPV16	E5	AATAAAACACCTAAACGCAG	AGG	R	70	89	35	44.85
3	HPV18	E5	ATACAGACAGATGGCAAAAG	CGG	R	140	159	40	41.24
4	HPV35	E5	TGAGCGTTAATCATTCCCAT	AGG	R	26	45	40	58.28
5	HPV39	E5	CAGTCTATGCAACAACCACA	TGG	R	19	38	45	56.36
6	HPV45	E5	GGACATTGCAGCACACATAA	AGG	R	162	181	45	46.72
7	HPV52	E5	TGACAGTGAATACAAAACAT	TGG	R	29	48	30	43.32
8	HPV58	E5	ATAGAAATAGATAGCACCAA	TGG	R	146	165	30	49.35
9	HPV73	E5	TAATCAATACCAATAACCAT	GGG	R	117	136	25	45.47
10	HPV73	E5	ATAATCAATACCAATAACCA	TGG	R	116	135	25	44.53