Predicted miRNAs of CoVs

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S.No.	miR ID	Gene	Mature sequence_5p	GC(%)_5p	Mature sequence_3p	GC(%)_3p	Orientation
1	MD3	NSP1	AAAAGGCGUUUUGCCUCAACUU	40.91	ACUUGAACAGCCCUAUGUGUUC	45.45	Direct
2	MD20	NSP2	ACUCAAACCCGUCCUUGAUUGG	50.00	UAAGGAAGGUGUAGAGUUUCUU	36.36	Direct
3	MD22	NSP2	UAAAUAAAUUUUUGGCUUUGUG	22.73	AGCUAAACUUAAAGCCUUGAAU	31.82	Direct
4	MD24	NSP3	CUGCCUAUACAGUUGAACUCGG	50.00	AUGAGUUCGCCUGUGUUGUGGC	54.55	Direct
5	MD45	NSP3	GAUUUUACUUUUACACCAGUAA	27.27	UAGCGUCACUUAUCAACACACU	40.91	Direct
6	MD83	NSP3	UCAGGCAUUAGUGUCUGAUGUU	40.91	AUGUUGGUGAUAGUGCGGAAGU	45.45	Direct
7	MD85	NSP3	UUAUCUACUUUUAUUUCAGCAG	27.27	UUGUUGAUUCAGAUGUAGAAAC	31.82	Direct
8	MD98	NSP4	UCAGCUUGUGUUUUGGCUGCUG	50.00	CCCUGACACACGUUAUGUGCUC	54.55	Direct
9	MD110	NSP4	UGAUGUGCUAUUACCUCUUACG	40.91	CUUACGCAAUAUAAUAGAUACU	27.27	Direct
10	MD124	3C-like proteinase (NSP5)	UAUUACAGUUAAUGUUUUAGCU	22.73	UUUUAGCUUGGUUGUACGCUGC	45.45	Direct
11	MD135	NSP6	AUACUAGUUUGUCUGGUUUUAA	27.27	UGUGUUAUGUAUGCAUCAGCUG	40.91	Direct
12	MD161	RdRp (NSP12)	AUGGUACCACAUAUAUCACGUC	40.91	AUCACGUCAACGUCUUACUAAA	36.36	Direct
13	MD170	RdRp (NSP12)	AUUACUUGUGUAUGCUGCUGAC	40.91	UACGUGCUUUUCAGUAGCUGCA	45.45	Direct
14	MD175	RdRp (NSP12)	UCGCACCGUAGCUGGUGUCUCU	59.09	GUGUCUCUAUCUGUAGUACUAU	36.36	Direct
15	MD196	Helicase	GUAUGCAAAAGUAUUCUACACU	31.82	UGGUAAGAGUCAUUUUGCUAUU	31.82	Direct
16	MD215	3'-to-5' exonuclease (NSP	UGUACCUCAAGCUGAUGUAGAA	40.91	CACAGCCUUGUAGUGACAAAGC	50.00	Direct
17	MD235	3'-to-5' exonuclease (NSP	AGGCUAUGCCUUCGAACAUAUC	45.45	CCUUCGAACAUAUCGUUUAUGG	40.91	Direct
18	MD236	3'-to-5' exonuclease (NSP	AUAACAGAUGCGCAAACAGGUU	40.91	GUGUGUGUUCUGUUAUUGAUUU	31.82	Direct
19	MD241	2'-O-ribose methyltransfe	UUGGAGGUUCCGUGGCUAUAAA	45.45	UGAUCUUUAUAAGCUCAUGGGA	36.36	Direct
20	MD248	2'-O-ribose methyltransfe	AAUACAAAUCCAAUUCAGUUGU	27.27	GAUAUGAUUUUAUCUCUUCUUA	22.73	Direct
21	MD256	S	UACUUGCUUUACAUAGAAGUUA	27.27	AGAAGUUAUUUGACUCCUGGUG	40.91	Direct
22	MD259	S	UACUAAUGUCUAUGCAGAUUCA	31.82	AUUCAUUUGUAAUUAGAGGUGA	27.27	Direct
23	MD289	ORF3a protein	CACUCCCUUUCGGAUGGCUUAU	50.00	GAUGGCUUAUUGUUGGCGUUGC	50.00	Direct
24	MD291	ORF3a protein	UUUGCAACUUGCUGUUGUUGUU	36.36	UGUAACAGUUUACUCACACCUU	36.36	Direct
25	MD307	M	UGAUCCUUCGUGGACAUCUUCG	50.00	CUUCGUAUUGCUGGACACCAUC	50.00	Direct
26	MD308	M	UGCUACAUCACGAACGCUUUCU	45.45	GAGCUUCGCAGCGUGUAGCAGG	63.64	Direct
27	MD311	ORF7a	ACACUCGCUACUUGUGAGCUUU	45.45	UGUGAGCUUUAUCACUACCAAG	40.91	Direct
28	MD312	ORF7a	AAUAGUGUUUAUAACACUUUGC	27.27	AAAGACAGAAUGAUUGAACUUU	27.27	Direct
29	MD313	ORF7b	UUUGGUUCUCACUUGAACUGCA	40.91	GAACUGCAAGAUCAUAAUGAAA	31.82	Direct
30	MD321	N	AGAGGCGGCAGUCAAGCCUCUU	59.09	UUCUCGUUCCUCAUCACGUAGU	45.45	Direct
31	MR42	NSP3	UGAGGAACUUAGUUUCUUCCAG	40.91	UUCUUCCAGAGUUGUUGUAACU	36.36	Reverse
32	MR44	NSP3	CACUUUUCUCAAAGCUUUCGCU	40.91	AUUUCAGUAGUGCCACCAGCCU	50.00	Reverse
33	MR63	NSP3	UUCUUAAAAGAGGGUGUGUAGU	36.36	CCACCACAUCACCAUUUAAGUC	45.45	Reverse
34	MR89	NSP4	CAUUAGUUGUGCGUAAUAUCGU	36.36	CACGACAAAACCCACUUCUCUU	45.45	Reverse
35	MR112	3C-like proteinase (NSP5)	AAAACAUUAACUGUAAUAGUUG	22.73	AGUUGUGUCCGUACCAGCUGCU	54.55	Reverse
36	MR143	RdRp (NSP12)	UAAGACGUUGACGUGAUAUAUG	36.36	ACCAUGUCACCGUCUAUUCUAA	40.91	Reverse
37	MR155	RdRp (NSP12)	CAUUUGAGUUAUAGUAGGGAUG	36.36	AAAAGUGCAUCUUGAUCCUCAU	36.36	Reverse
38	MR166	Helicase	CAUGUAUUUUUAUAUAAACCAA	18.18	AAUGGGUGGUUUAUGUGAUUUA	31.82	Reverse
39	MR169	Helicase	UUUUUAGUUACACGAUAACCAG	31.82	AACCAGUAAAGACAUAAUUUCG	31.82	Reverse
40	MR180	Helicase	CAAAAUCUUUGAGGCUACAGCA	40.91	AGGCUACAGCAUUCUGUGAAUU	40.91	Reverse
41	MR187	3'-to-5' exonuclease (NSP	CAAUCCAUGCACGUACAUGUCU	45.45	UGUCUUAUAGCUUCUUCGCGGG	50.00	Reverse
42	MR212	2'-O-ribose methyltransfe	UUAGGUAAUGUUGCACUAUCAC	36.36	AUCACCAUAAUUUUGAAGGUCA	31.82	Reverse
43	MR225	S	AACUUCUAUGUAAAGCAAGUAA	27.27	CAAGUAAAGUUUGAAACCUAGU	31.82	Reverse
44	MR227	S	UCCUUUUUCUACAGUGAAGGAU	36.36	UUGUUUCUGAGAGAGGGUCAAG	45.45	Reverse
45	MR243	S	GGCAAUGAUGGAUUGACUAGCU	45.45	UGAUAACUAGCGCAUAUACCUG	40.91	Reverse
46	MR274	ORF3a	AUCAACAAUUUUAUUGUAGAUG	22.73	AAGAAGGUAACAUGUUCAACAC	36.36	Reverse
47	MR284	M	CCUGCUACACGCUGCGAAGCUC	63.64	AAGCGUUCGUGAUGUAGCAACA	45.45	Reverse
48	MR286	M, ORF6	AGAUGAAACAUCUGUUGUCACU	36.36	UCUGUUGUCACUUACUGUACAA	36.36	Reverse
49	MR304	N, ORF10	AAGAGUAGACUAUAUAUCGUAA	27.27	UUUAUAUAGCCCAUCUGCCUUG	40.91	Reverse

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