Vhf12099 details

Gene vhfRNAi AccessionVhf12099
Gene SymbolNPM3
Gene DescriptionNucleoplasmin-3
Gene Name in PaperNPM3
GroupHost Factor
Ensembl Gene IDENSG00000107833 
UniProt IDO75607
Entrez Gene ID10360
GOView
Host OrganismHomo sapiens
Virus Virus full nameWest Nile virus
Virus AbbreviationWNV
TaxonomyView
Results PhenotypeIncreased infection
Hits Number*Not mentioned
Confirmed Hits Number306
ScoreNA
UnitNA
Methods Assay Type Cell-based
BioModel Description HeLa cells for screening a genome-scale pooled siRNA library of 21,121 human genes (a pool of four siRNAs per gene)
Confirmatory Screen DescriptionConfirmed hits were validated using pooled single siRNA and cytotoxicity assay
Primary Screen Description#Any gene for which a minimum of two siRNAs reduced (HSF) or increased (HRF) the percentage of infected cells by >2-fold, and the fold change was >2 times the standard deviation (s.d.) of the percentage of control cells infected, was scored as a hit.
Note/CommentIncreased infection(23)
References Pubmed ID18690214
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*Replicates that are beyond 2-3 standard deviation values from the mean (Sharma 2009)
#A strong signal/background ratio with low variation in the assay (Zhang 1999)