RNAi screen analysis of viral host genes
| Gene | vhfRNAi Accession | Vhf02256 |
| Gene Symbol | RNF38 | |
| Gene Description | E3 ubiquitin-protein ligase RNF38 (EC 6.3.2.-) (RING finger protein 38) | |
| Gene Name in Paper | RNF38 | |
| Group | Host Factor | |
| Ensembl Gene ID | ENST00000259605 ENST00000350199 ENST00000353739 ENST00000357058 ENST00000377877 ENST00000377885 ENST00000611646 | |
| UniProt ID | Q9H0F5 | |
| Entrez Gene ID | 152006 | |
| GO | View | |
| Host | Organism | Homo sapiens |
| Virus | Virus full name | Human immunodeficiency virus 1 |
| Virus Abbreviation | HIV-1 | |
| Taxonomy | View | |
| Results | Phenotype | Up regulated |
| Hits Number* | 3043 | |
| Confirmed Hits Number | 1083 | |
| Score | NA | |
| Unit | NA | |
| Methods | Assay Type | Cell-based |
| BioModel Description | CD4+ T-cell subsets enriched in cells exhibiting Th17 (CCR4+CCR6+), Th1 (CXCR3+CCR6?), Th2 (CCR4+CCR6?), and Th1Th17 (CXCR3+CCR6+) | |
| Confirmatory Screen Description | SYBR Green real-time RT-PCR | |
| Primary Screen Description# | Differentially expressed genes based on p value < 0.05 and fold change (FC, cut-off 1.3) | |
| Note/Comment | Identification of novel HIV-1 dependency factors | |
| References | Pubmed ID | 26654242 |