NiVmiR ID NiVmiR Name Genomic region Mature (5p) sequence GC(%) Start Stop Mature (3p) sequence GC(%) Start Stop Score Rank
NiV-NP1 NP1 N UACUGAUCGCUAAAGCAGUUAC 40.91 632 654 GAGGAAAGUGAAACUAGAAGAU 36.36 670 692 103.6 22
NiV-NP2 NP2 N AGAUGAGUAUUUCAUCCCUUGC 40.91 1457 1479 AUCCCUUGCUAACAGUGUGCCG 54.55 1470 1492 130.4 14
NiV-NP3 NP3 N AUCCUAGAGUAAAUCUCUUGGA 36.36 2294 2316 UUUCUUAAUGAGUUAGUAGUAC 27.27 2325 2347 155.3 8
NiV-PP1 PP1 P/V/C ACGUCCAAUGGAUUCAUUGGGU 45.45 3225 3247 UGGGUUUUCCGCCAACACUUGA 50.00 3242 3264 140.7 12
NiV-PP2 PP2 P/V/C CACUCUUGCUCUUAGUUAGUCA 40.91 4738 4760 AUCAGCAUAGAGUAGAAAAUUG 31.82 4826 4848 112.0 18
NiV-PP3 PP3 P/V/C UUAAAUCUUCGAAUGAUCAUGA 27.27 4857 4879 CAUGACAAAAACAACAAUUUUC 27.27 4874 4896 126.3 15
NiV-MP1 MP1 M UGUGUCCUCUUUGACAAAGGCU 45.45 5091 5113 GACAAAGGCUAGCGGAUUUGAG 50.00 5103 5125 110.5 19
NiV-FP1 FP1 F UGUAGUGUUGGGAUUCUACAUU 36.36 6719 6741 AUUCUACAUUAUGAGAAAUUGA 22.73 6731 6753 104.1 20
NiV-FP2 FP2 F CAUGACACUCCCUGUGCACUGA 54.55 6865 6887 UGAGACAUGUUCGACACAUUCG 45.45 6884 6906 125.4 16
NiV-GP1 GP1 G GAUGAAGUUCCUUCUUUAUUUA 27.27 9719 9741 AAUGUCUGGACCCCACCAAAUC 50.00 9746 9768 142.0 11
NiV-GP2 GP2 G CUAAUUGACAGAAUCAAUUGGA 31.82 10478 10500 UUGGAUAAGCGCGGGUGUAUUC 50.00 10495 10517 180.1 4
NiV-GP3 GP3 G UCAAGUUCUAAGCAUAAUGAUA 27.27 11086 11108 AAUGCGAACUUGUCUUGAUGUA 36.36 11114 11136 183.3 2
NiV-LP1 LP1 L UUUUGGUUUACUAUCAAAACAG 27.27 11924 11946 AAACAGAGAUGCGAGCAGUGAU 45.45 11940 11962 133.9 13
NiV-LP2 LP2 L AUCCUAUUCUUGAGGCUAAAGU 36.36 12504 12526 AAAGUUGCUGCAGAAAAAGUGA 36.36 12521 12543 171.9 5
NiV-LP3 LP3 L CAUGUGCGGGGAGGUAAAGAGG 59.09 12630 12652 CCCUAUACCCAUUUAUUAUAGU 31.82 12675 12697 212.3 1
NiV-LP4 LP4 L CAGAAUUUCUUAAGAUCAGUUG 31.82 13539 13561 UUACUGUAUCAAAUUUUGUCCC 31.82 13573 13595 155.6 7
NiV-LP5 LP5 L AAAGUUCAUCCUAAUCUUCCCU 36.36 13931 13953 UUGAAAGGUUAAGGAUGAACUU 31.82 13998 14020 180.8 3
NiV-LP6 LP6 L CAUACUCGGGCAACUUGCCUGA 54.55 14580 14602 UGCCUGACUCACAAAGCAUCAC 50.00 14595 14617 103.9 21
NiV-LP7 LP7 L GGUGGUUCUUUGUACCUAGGGA 50.00 15150 15172 AGGUAGAUAGAGAGCACUCAUC 45.45 15186 15208 150.3 10
NiV-LP8 LP8 L UACAAUUCAGGUAUAGAUGGAG 36.36 17000 17022 AAACUAUUUCCCUCUGAAUACU 31.82 17048 17070 116.7 17
NiV-LP9 LP9 L CUUGAGAUUGGGAAUCCAGGGG 54.55 17244 17266 AUUAGAUGGGAAUGUUCUACUA 31.82 17325 17347 171.6 6
NiV-LP10 LP10 L ACUAGUAGAACAUUCCCAUCUA 36.36 17266 17288 AAUGUUAUGAUGGAGGACGGAC 45.45 17303 17325 152.6 9