Resources
S.No. |
Server Name |
Description |
Category |
Year |
Journal | URL | PMID |
|
|---|---|---|---|---|---|---|---|---|
| 1 | aBiofilm | aBiofilm: a resource of anti-biofilm agents and their potential implications in targeting antibiotic drug resistance. | Anti-biofilm agents | 2018 | Nucleic Acids Research | http://bioinfo.imtech.res.in/manojk/abiofilm | 29156005 | |
| 2 | ASPsiRNA | ASPsiRNA: A Resource of ASP-siRNAs Having Therapeutic Potential for Human Genetic Disorders and Algorithm for Prediction of Their Inhibitory Efficacy | Allele specific siRNA | 2017 | G3 (Bethesda) | http://crdd.osdd.net/servers/aspsirna/ | 28696921 | |
| 3 | AVP-Pepred | AVP-PEpred: Regression-based machine learning approach for prediction of percent antiviral efficacy of peptides | Antiviral, Peptide | 2016 | Proceedings of the VIROCON-2016 an international conference of Indian Virological Society (IVS) at ICAR-Indian Institute of Horticulture Research, Bengaluru | http://crdd.osdd.net/servers/avppep/ | Poster | |
| 4 | AVCpred | AVCpred: An integrated web server for prediction and design of antiviral compounds | Antiviral, Molecule | 2016 | Chemical Biology & Drug Design | http://crdd.osdd.net/servers/avcpred | 27490990 | |
| 5 | ZikaVR | ZikaVR: An Integrated Zika Virus Resource for Genomics, Proteomics, Phylogenetic and Therapeutic Analysis | Viral, Genomic Resources | 2016 | Scientific Reports | http://bioinfo.imtech.res.in/manojk/zikavr | 27633273 | |
| 6 | ViralEpi v1. 0 | ViralEpi v1. 0: a high-throughput spectrum of viral epigenomic methylation profiles from diverse diseases | Viral, Epigenome | 2016 | Epigenomics | http://bioinfo.imtech.res.in/manojk/viralepi | 26678852 | |
| 7 | MSLVP | MSLVP: prediction of multiple subcellular localization of viral proteins using a support vector machine | Viral, Subcellular Localization | 2016 | Molecular BioSystems | http://bioinfo.imtech.res.in/manojk/mslvpred | 27272007 | |
| 8 | siRNAmod | siRNAmod: A database of experimentally validated chemically modified siRNAs | RNAi resources | 2016 | Scientific Reports | http://crdd.osdd.net/servers/sirnamod | 26818131 | |
| 9 | SMEpred workbench | SMEpred workbench: a web server for predicting efficacy of chemically modified siRNAs | RNAi resources | 2016 | RNA Biology | http://bioinfo.imtech.res.in/manojk/smepred | 27603513 | |
| 10 | ge-CRISPR | ge-CRISPR: An integrated pipeline for the prediction and analysis of sgRNAs genome editing efficiency for CRISPR/Cas system | Crispr | 2016 | Scientific Reports | http://bioinfo.imtech.res.in/manojk/gecrispr | 27581337 | |
| 11 | ABPpred | ABPpred: an in-silico method to predict anti-biofilm peptides as therapeutics | Quorum sensing | 2016 | Proceedings of the international EMBO Conference: Chemical Biology 2016 organized by European Molecular Biology Laboratory (EMBL) at Heidelberg, Germany | http://bioinfo.imtech.res.in/manojk/abppred/ | Poster | |
| 12 | AVP‐IC50Pred | AVP‐IC50Pred: Multiple machine learning techniques based prediction of peptide antiviral activity in terms of half maximal inhibitory concentration (IC50) | Antiviral, Peptide | 2015 | Biopolymers | http://crdd.osdd.net/servers/ic50avp | 26213387 | |
| 13 | HPVbase | HPVbase–a knowledgebase of viral integrations, methylation patterns and microRNAs aberrant expression: As potential biomarkers for Human papillomaviruses mediated carcinomas | Viral, Genomic Resources | 2015 | Scientific Reports | http://crdd.osdd.net/servers/hpvbase | 26205472 | |
| 14 | CrisprGE | CrisprGE: a central hub of CRISPR/Cas-based genome editing | Crispr | 2015 | Database (Oxford) | http://crdd.osdd.net/servers/crisprge | 26120138 | |
| 15 | SigMol | SigMol: repertoire of quorum sensing signaling molecules in prokaryotes | Quorum sensing | 2015 | Nucleic Acids Research | http://bioinfo.imtech.res.in/manojk/sigmol | 26490957 | |
| 16 | QSPpred | QSPpred: Prediction and Analysis of Quorum Sensing Peptides Based on Sequence Features | Quorum sensing | 2015 | PLoS One | http://crdd.osdd.net/servers/qsppred | 25781990 | |
| 17 | AVPdb | AVPdb: a database of experimentally validated antiviral peptides targeting medically important viruses | Antiviral, Peptide | 2014 | Nucleic Acids Research | http://crdd.osdd.net/servers/avpdb | 24285301 | |
| 18 | VIRmiRNA | VIRmiRNA: a comprehensive resource for experimentally validated viral miRNAs and their targets | Antiviral, RNAi resources | 2014 | Database (Oxford) | http://crdd.osdd.net/servers/virmirna | 25380780 | |
| 19 | AVPpred | AVPpred: collection and prediction of highly effective antiviral peptides | Antiviral, Peptide | 2013 | Nucleic Acids Research | http://crdd.osdd.net/servers/avppred | 22638580 | |
| 20 | HIPdb | HIPdb: A Database of Experimentally Validated HIV Inhibiting Peptides | Antiviral, Peptide | 2013 | PLoS One | http://crdd.osdd.net/servers/hipdb | 23359817 | |
| 21 | VIRsiRNApred | VIRsiRNApred: a web server for predicting inhibition efficacy of siRNAs targeting human viruses | Antiviral, RNAi resources | 2013 | Journal of Translational Medicine | http://crdd.osdd.net/servers/virsirnapred | 24330765 | |
| 22 | VIRsiRNAdb | VIRsiRNAdb: a curated database of experimentally validated viral siRNA/shRNA | Antiviral, RNAi | 2012 | Nucleic Acids Research | http://crdd.osdd.net/servers/virsirnadb/ | 22139916 | |
| 23 | HIVsirDB | HIVsirDB: A Database of HIV Inhibiting siRNAs | Antiviral, RNAi | 2011 | PLoS One | http://crdd.osdd.net/raghava/hivsir/ | 22022467 | |
| 24 | HIVprotI | HIVprotI: HIV Protein Inhibitor Prediction | Antiviral, Molecule | NA | NA | http://bioinfo.imtech.res.in/manojk/hivproti/ | NA | |
| 25 | HPVomics | HPVomics: A therapeutic and genomic resource for Human Papillomavirus study | Viral, Genomic Resources | NA | NA | http://bioinfo.imtech.res.in/manojk/hpvomics/ | NA | |
| 26 | ASPsiRNA | ASPsiRNA: A Resource for ASP-siRNAs targeting Dominantly Inherited Human Genetic Disorders | RNAi resources | NA | NA | http://crdd.osdd.net/servers/aspsirna/ | NA | |
| 27 | vhfRNAi | vhfRNAi: A web-platform for analysis of host-factors involved in viral infections discovered by genome-wide RNAi screen | RNAi resources | NA | NA | http://bioinfo.imtech.res.in/manojk/vhfrnai/ | NA |