ge-CRISPR

Important resources for CRISPR studies on the web

S. No.	Resource	Year	Description	Working URL	Publication
1	CrisprGE	2015	A central hub of CRISPR/Cas-based genome editing.	http://crdd.osdd.net/servers/crisprge/	Database (Oxford)
2	sgRNA scorer	2015	In vivo library-on-library methodology to simultaneously assess single guide RNA (sgRNA) activity across ~1,400 genomic loci	https://crispr.med.harvard.edu/sgRNAScorer/	Nature Methods
3	WU-CRISPR	2015	characteristics of functional guide RNAs for the CRISPR/Cas9 system	http://crispr.wustl.edu/	Genome biology
4	CrisprScan	2015	Designing highly efficient sgRNAs for CRISPR-Cas9 targeting in vivo	http://www.crisprscan.org/	Nature Methods
5	sgRNA designer	2014	Rational design of highly active sgRNAs for CRISPR-Cas9-mediated gene inactivation	http://www.broadinstitute.org/rnai/public/analysis-tools/sgrna-design	Nature Biotechnology
6	E-CRISP	2014	CRIPSR target site prediction tool	http://www.e-crisp.org/E-CRISP/	Nature Methods
7	CHOPCHOP	2014	Web tool for designing of CRISPR/Cas9 and TALENs	https://chopchop.rc.fas.harvard.edu/	Nucleic Acids Res.
8	CRISPRstrand	2014	Repeat orientation prediction tool to determine crRNA encoding strand at CRISPR loci	http://rna.informatik.uni-freiburg.de/CRISPRmap/Input.jsp‎	Bioinformatics
9	sgRNAcas9	2014	A software package for designing CRISPR sgRNA and evaluating potential off-target cleavage sites	http://www.biootools.com/	PLoS One
10	SSFinder	2014	CRISPR-Cas target site prediction tool	https://code.google.com/p/ssfinder/	Biomed Res Int.
11	CRISPR-P	2014	A Web Tool for Synthetic Single-Guide RNA Design of CRISPR-System in Plants	http://cbi.hzau.edu.cn/crispr/	Mol Plant.
12	GT-Scan	2014	Identifying unique genomic targets	http://gt-scan.braembl.org.au/gt-scan/	Bioinformatics
13	CasOT	2014	A genome-wide Cas9/gRNA off-target searching tool	http://eendb.zfgenetics.org/casot/	Bioinformatics
14	Cas-OFFinder	2014	A fast and versatile algorithm that searches for potential off target sites of Cas9 Rna guided endonucleases	http://www.rgenome.net/cas-offinder	Bioinformatics
15	CRISPRTarget	2013	Bioinformatics tool that helps in prediction and analysis of targets of CRISPR RNAs. It compares the Crispr sequences with the viral genomes	http://bioanalysis.otago.ac.nz/CRISPRTarget/crispr_analysis.html	RNA Biol.
16	CRISPI	2009	Database that finds CRISPRs in given genomes and calculates its similarity with other sequences	http://crispi.genouest.org/	Bioinformatics
17	CRISPRdb	2007	Database of finding CRISPRs and repeat element extraction tool	http://crispr.u-psud.fr/crispr/	BMC Bioinformatics
18	CRISPRdirect	2014	Rational design of CRISPR/Cas target	http://crispr.dbcls.jp	Bioinformatics