PDB Blast result (Template identification)
Templates and their alignment with Capsid protein query sequence
Query sequence:
>YP_002790881.1-Capsid
RIVNMLKRGVARVNPLGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIKKFKKDLAAMLRIINARKERKRRGADTSIGIIGLLLTTAMA
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-Capsid
(111 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
1R6R:1:A,B|pdbid|entity|chain(s)|sequence 76 1e-14
1SFK:1:A,B,C,D,E,F,G,H|pdbid|entity|chain(s)|sequence 73 1e-13
>1R6R:1:A,B|pdbid|entity|chain(s)|sequence
Length = 100
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 3 VNMLKRGVARVNPLGGL-KRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRWGSV 61
NMLKR RV+ + L KR G+L G GP+++ +A++AFLRF I P+ G++ RWG++
Sbjct: 13 FNMLKRERNRVSTVQQLTKRFSLGMLQGRGPLKLFMALVAFLRFLTIPPTAGILKRWGTI 72
Query: 62 GKKEAMEIIKKFKKDLAAMLRIINARK 88
K +A+ +++ F+K++ ML I+N R+
Sbjct: 73 KKSKAINVLRGFRKEIGRMLNILNRRR 99
>1SFK:1:A,B,C,D,E,F,G,H|pdbid|entity|chain(s)|sequence
Length = 76
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 49/76 (64%)
Query: 12 RVNPLGGLKRLPAGLLLGHGPIRMVLAILAFLRFTAIKPSLGLINRWGSVGKKEAMEIIK 71
RV L GLKR L+ G GP R VLA+LAF RFTAI P+ +++RW SV K+ AM+ +
Sbjct: 1 RVLSLTGLKRAMLSLIDGRGPTRFVLALLAFFRFTAIAPTRAVLDRWRSVNKQTAMKHLL 60
Query: 72 KFKKDLAAMLRIINAR 87
FKK+L + IN R
Sbjct: 61 SFKKELGTLTSAINRR 76
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.327 0.144 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 8,082,771
Number of extensions: 272890
Number of successful extensions: 991
Number of sequences better than 10.0: 11
Number of HSP's gapped: 991
Number of HSP's successfully gapped: 11
Length of query: 111
Length of database: 42,273,433
Length adjustment: 75
Effective length of query: 36
Effective length of database: 29,309,308
Effective search space: 1055135088
Effective search space used: 1055135088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)
Templates and their alignment with Envelope protein query sequence
Query Sequence:
>YP_002790881.1-Envelope
IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYCYEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFTCSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIGYETDEDRAKVEVTPN
SPRAEATLGGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGVSYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCK
IPVQMAVDMQTLTPVGRLITANPVITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAVLGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGSISLTCLALGGVMIFLSTAVSA
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-Envelope
(500 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
5IZ7:1:A,B,C|pdbid|entity|chain(s)|sequence 1009 0.0
5IRE:1:A,C,E|pdbid|entity|chain(s)|sequence 1009 0.0
5JHM:1:A,B|pdbid|entity|chain(s)|sequence 830 0.0
5JHL:1:A|pdbid|entity|chain(s)|sequence 830 0.0
3J6U:1:A,C,E|pdbid|entity|chain(s)|sequence 619 e-177
3J6T:1:A,C,E|pdbid|entity|chain(s)|sequence 619 e-177
3J6S:1:A,C,E|pdbid|entity|chain(s)|sequence 619 e-177
4CCT:1:A,B,C|pdbid|entity|chain(s)|sequence 618 e-177
4B03:1:A,B,C|pdbid|entity|chain(s)|sequence 618 e-177
4C2I:1:A,C,E|pdbid|entity|chain(s)|sequence 615 e-176
>5IZ7:1:A,B,C|pdbid|entity|chain(s)|sequence
Length = 504
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/504 (96%), Positives = 494/504 (98%), Gaps = 4/504 (0%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC
Sbjct: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKF
Sbjct: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFA 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI----GYETDEDRAKVEVTPNSPRAEATL 176
CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI G+ETDE+RAKVE+TPNSPRAEATL
Sbjct: 121 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATL 180
Query: 177 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 236
GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE
Sbjct: 181 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 240
Query: 237 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRL 296
ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRL SGHLKCRLKMDKLRL
Sbjct: 241 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRL 300
Query: 297 KGVSYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLIT 356
KGVSYSLCTAAFTFTK+PAETLHGTVTVEVQYAGTDGPCK+P QMAVDMQTLTPVGRLIT
Sbjct: 301 KGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLIT 360
Query: 357 ANPVITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKR 416
ANPVITESTENSKMMLELDPPFGDSYIVIGVG+KKITHHWHRSGSTIGKAFEATVRGAKR
Sbjct: 361 ANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKR 420
Query: 417 MAVLGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTK 476
MAVLGDTAWDFGSVGG NSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLL+WLGLNTK
Sbjct: 421 MAVLGDTAWDFGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTK 480
Query: 477 NGSISLTCLALGGVMIFLSTAVSA 500
NGSISL CLALGGV+IFLSTAVSA
Sbjct: 481 NGSISLMCLALGGVLIFLSTAVSA 504
>5IRE:1:A,C,E|pdbid|entity|chain(s)|sequence
Length = 504
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/504 (96%), Positives = 494/504 (98%), Gaps = 4/504 (0%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC
Sbjct: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKF
Sbjct: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFA 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI----GYETDEDRAKVEVTPNSPRAEATL 176
CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI G+ETDE+RAKVE+TPNSPRAEATL
Sbjct: 121 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATL 180
Query: 177 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 236
GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE
Sbjct: 181 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 240
Query: 237 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRL 296
ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRL SGHLKCRLKMDKLRL
Sbjct: 241 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRL 300
Query: 297 KGVSYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLIT 356
KGVSYSLCTAAFTFTK+PAETLHGTVTVEVQYAGTDGPCK+P QMAVDMQTLTPVGRLIT
Sbjct: 301 KGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLIT 360
Query: 357 ANPVITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKR 416
ANPVITESTENSKMMLELDPPFGDSYIVIGVG+KKITHHWHRSGSTIGKAFEATVRGAKR
Sbjct: 361 ANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGKAFEATVRGAKR 420
Query: 417 MAVLGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTK 476
MAVLGDTAWDFGSVGG NSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLL+WLGLNTK
Sbjct: 421 MAVLGDTAWDFGSVGGALNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLMWLGLNTK 480
Query: 477 NGSISLTCLALGGVMIFLSTAVSA 500
NGSISL CLALGGV+IFLSTAVSA
Sbjct: 481 NGSISLMCLALGGVLIFLSTAVSA 504
>5JHM:1:A,B|pdbid|entity|chain(s)|sequence
Length = 416
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/409 (96%), Positives = 402/409 (98%), Gaps = 4/409 (0%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC
Sbjct: 2 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 61
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKF
Sbjct: 62 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFA 121
Query: 121 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI----GYETDEDRAKVEVTPNSPRAEATL 176
CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI G+ETDE+RAKVE+TPNSPRAEATL
Sbjct: 122 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATL 181
Query: 177 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 236
GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE
Sbjct: 182 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 241
Query: 237 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRL 296
ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRL SGHLKCRLKMDKLRL
Sbjct: 242 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRL 301
Query: 297 KGVSYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLIT 356
KGVSYSLCTAAFTFTK+PAETLHGTVTVEVQYAGTDGPCK+P QMAVDMQTLTPVGRLIT
Sbjct: 302 KGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLIT 361
Query: 357 ANPVITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGK 405
ANPVITESTENSKMMLELDPPFGDSYIVIGVG+KKITHHWHRSGSTIGK
Sbjct: 362 ANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGK 410
>5JHL:1:A|pdbid|entity|chain(s)|sequence
Length = 416
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 396/409 (96%), Positives = 402/409 (98%), Gaps = 4/409 (0%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC
Sbjct: 2 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 61
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKF
Sbjct: 62 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFA 121
Query: 121 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI----GYETDEDRAKVEVTPNSPRAEATL 176
CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMI G+ETDE+RAKVE+TPNSPRAEATL
Sbjct: 122 CSKKMTGKSIQPENLEYRIMLSVHGSQHSGMIVNDTGHETDENRAKVEITPNSPRAEATL 181
Query: 177 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 236
GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE
Sbjct: 182 GGFGSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKE 241
Query: 237 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRL 296
ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRL SGHLKCRLKMDKLRL
Sbjct: 242 ALVEFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLSSGHLKCRLKMDKLRL 301
Query: 297 KGVSYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLIT 356
KGVSYSLCTAAFTFTK+PAETLHGTVTVEVQYAGTDGPCK+P QMAVDMQTLTPVGRLIT
Sbjct: 302 KGVSYSLCTAAFTFTKIPAETLHGTVTVEVQYAGTDGPCKVPAQMAVDMQTLTPVGRLIT 361
Query: 357 ANPVITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGK 405
ANPVITESTENSKMMLELDPPFGDSYIVIGVG+KKITHHWHRSGSTIGK
Sbjct: 362 ANPVITESTENSKMMLELDPPFGDSYIVIGVGEKKITHHWHRSGSTIGK 410
>3J6U:1:A,C,E|pdbid|entity|chain(s)|sequence
Length = 493
Score = 619 bits (1597), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/501 (58%), Positives = 374/501 (74%), Gaps = 9/501 (1%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
+RC+GV NRDFVEG+SG TWVDVVLEHGGCVT MA++KPT+DIEL T + +A +R C
Sbjct: 1 MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
E I+++ +DSRCPTQGEA L ++ D YVCK T VDRGWGNGCGLFGKGSLVTCAKF
Sbjct: 61 IEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQ 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVH-GSQHSGMIGYETDEDRAKVEVTPNSPRAEATLGGF 179
C + + GK +Q ENL+Y ++++VH G QH +G ET A E+TP + EA L +
Sbjct: 121 CLEPIEGKVVQYENLKYTVIITVHTGDQHQ--VGNETQGVTA--EITPQASTTEAILPEY 176
Query: 180 GSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALV 239
G+LGL+C PRTGLDF+++ LTM NK W+VH++WF D+PLPW +GA T TP WN KE LV
Sbjct: 177 GTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLV 236
Query: 240 EFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGV 299
FK+AHAK+Q VVVLGSQEGA+HTAL GA E + G +F+GHLKCRLKMDKL LKG+
Sbjct: 237 TFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGT-SIFAGHLKCRLKMDKLELKGM 295
Query: 300 SYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLITANP 359
SY++CT F K +ET HGT+ ++V+Y G D PCKIP D Q GRLITANP
Sbjct: 296 SYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTE-DGQGKAHNGRLITANP 354
Query: 360 VITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAV 419
V+T+ E + +E +PPFG+S IVIG+GD + +W++ GS+IGK FEAT RGA+RMA+
Sbjct: 355 VVTKKEE--PVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAI 412
Query: 420 LGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGS 479
LGDTAWDFGSVGGV NSLGK +HQIFG+A+ +LF G+SW +I IG LL W+GLN+KN S
Sbjct: 413 LGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTS 472
Query: 480 ISLTCLALGGVMIFLSTAVSA 500
+S +C+A+G + ++L V A
Sbjct: 473 MSFSCIAIGIITLYLGAVVQA 493
>3J6T:1:A,C,E|pdbid|entity|chain(s)|sequence
Length = 493
Score = 619 bits (1597), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/501 (58%), Positives = 374/501 (74%), Gaps = 9/501 (1%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
+RC+GV NRDFVEG+SG TWVDVVLEHGGCVT MA++KPT+DIEL T + +A +R C
Sbjct: 1 MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
E I+++ +DSRCPTQGEA L ++ D YVCK T VDRGWGNGCGLFGKGSLVTCAKF
Sbjct: 61 IEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQ 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVH-GSQHSGMIGYETDEDRAKVEVTPNSPRAEATLGGF 179
C + + GK +Q ENL+Y ++++VH G QH +G ET A E+TP + EA L +
Sbjct: 121 CLEPIEGKVVQYENLKYTVIITVHTGDQHQ--VGNETQGVTA--EITPQASTTEAILPEY 176
Query: 180 GSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALV 239
G+LGL+C PRTGLDF+++ LTM NK W+VH++WF D+PLPW +GA T TP WN KE LV
Sbjct: 177 GTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLV 236
Query: 240 EFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGV 299
FK+AHAK+Q VVVLGSQEGA+HTAL GA E + G +F+GHLKCRLKMDKL LKG+
Sbjct: 237 TFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGT-SIFAGHLKCRLKMDKLELKGM 295
Query: 300 SYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLITANP 359
SY++CT F K +ET HGT+ ++V+Y G D PCKIP D Q GRLITANP
Sbjct: 296 SYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTE-DGQGKAHNGRLITANP 354
Query: 360 VITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAV 419
V+T+ E + +E +PPFG+S IVIG+GD + +W++ GS+IGK FEAT RGA+RMA+
Sbjct: 355 VVTKKEE--PVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAI 412
Query: 420 LGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGS 479
LGDTAWDFGSVGGV NSLGK +HQIFG+A+ +LF G+SW +I IG LL W+GLN+KN S
Sbjct: 413 LGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTS 472
Query: 480 ISLTCLALGGVMIFLSTAVSA 500
+S +C+A+G + ++L V A
Sbjct: 473 MSFSCIAIGIITLYLGAVVQA 493
>3J6S:1:A,C,E|pdbid|entity|chain(s)|sequence
Length = 493
Score = 619 bits (1597), Expect = e-177, Method: Compositional matrix adjust.
Identities = 294/501 (58%), Positives = 374/501 (74%), Gaps = 9/501 (1%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
+RC+GV NRDFVEG+SG TWVDVVLEHGGCVT MA++KPT+DIEL T + +A +R C
Sbjct: 1 MRCVGVGNRDFVEGLSGATWVDVVLEHGGCVTTMAKNKPTLDIELQKTEATQLATLRKLC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
E I+++ +DSRCPTQGEA L ++ D YVCK T VDRGWGNGCGLFGKGSLVTCAKF
Sbjct: 61 IEGKITNITTDSRCPTQGEAVLPEEQDQNYVCKHTYVDRGWGNGCGLFGKGSLVTCAKFQ 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVH-GSQHSGMIGYETDEDRAKVEVTPNSPRAEATLGGF 179
C + + GK +Q ENL+Y ++++VH G QH +G ET A E+TP + EA L +
Sbjct: 121 CLEPIEGKVVQYENLKYTVIITVHTGDQHQ--VGNETQGVTA--EITPQASTTEAILPEY 176
Query: 180 GSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALV 239
G+LGL+C PRTGLDF+++ LTM NK W+VH++WF D+PLPW +GA T TP WN KE LV
Sbjct: 177 GTLGLECSPRTGLDFNEMILLTMKNKAWMVHRQWFFDLPLPWASGATTETPTWNRKELLV 236
Query: 240 EFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGV 299
FK+AHAK+Q VVVLGSQEGA+HTAL GA E + G +F+GHLKCRLKMDKL LKG+
Sbjct: 237 TFKNAHAKKQEVVVLGSQEGAMHTALTGATEIQNSGGT-SIFAGHLKCRLKMDKLELKGM 295
Query: 300 SYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLITANP 359
SY++CT F K +ET HGT+ ++V+Y G D PCKIP D Q GRLITANP
Sbjct: 296 SYAMCTNTFVLKKEVSETQHGTILIKVEYKGEDAPCKIPFSTE-DGQGKAHNGRLITANP 354
Query: 360 VITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAV 419
V+T+ E + +E +PPFG+S IVIG+GD + +W++ GS+IGK FEAT RGA+RMA+
Sbjct: 355 VVTKKEE--PVNIEAEPPFGESNIVIGIGDNALKINWYKKGSSIGKMFEATARGARRMAI 412
Query: 420 LGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGS 479
LGDTAWDFGSVGGV NSLGK +HQIFG+A+ +LF G+SW +I IG LL W+GLN+KN S
Sbjct: 413 LGDTAWDFGSVGGVLNSLGKMVHQIFGSAYTALFSGVSWVMKIGIGVLLTWIGLNSKNTS 472
Query: 480 ISLTCLALGGVMIFLSTAVSA 500
+S +C+A+G + ++L V A
Sbjct: 473 MSFSCIAIGIITLYLGAVVQA 493
>4CCT:1:A,B,C|pdbid|entity|chain(s)|sequence
Length = 495
Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/501 (58%), Positives = 372/501 (74%), Gaps = 7/501 (1%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
+RC+G+SNRDFVEG+S WVDVVLEHG CVT MA+DKPT+DIEL+ T V+N A +R C
Sbjct: 1 MRCVGISNRDFVEGLSATGWVDVVLEHGSCVTTMAKDKPTLDIELLKTEVTNPAILRKLC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
EA IS+ +DSRCPTQGEA L ++ DT +VC+RT VDRGWGNGCGLFGKGSL+TCAKF
Sbjct: 61 IEAKISNTTTDSRCPTQGEATLVEEQDTNFVCRRTFVDRGWGNGCGLFGKGSLITCAKFK 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVH-GSQHSGMIGYETDEDRAKVEVTPNSPRAEATLGGF 179
C K+ GK +Q ENL+Y ++++VH G QH +G ET E +TP +P +E L +
Sbjct: 121 CVTKLEGKIVQYENLKYSVIVTVHTGDQHQ--VGNETTEHGTTATITPQAPTSEIQLTDY 178
Query: 180 GSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALV 239
G+L LDC PRTGLDF+++ LTM K WLVHK+WF D+PLPW +GA T WN ++ LV
Sbjct: 179 GALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 238
Query: 240 EFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGV 299
FK AHAK+Q VVVLGSQEGA+HTAL GA E + G +F+GHLKCRLKMDKL LKGV
Sbjct: 239 TFKTAHAKKQEVVVLGSQEGAMHTALTGATEIQTSGTT-TIFAGHLKCRLKMDKLTLKGV 297
Query: 300 SYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLITANP 359
SY +CT +F K AET HGTV V+V+Y GTD PCKIP + D + + GRLITANP
Sbjct: 298 SYVMCTGSFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFS-SQDEKGVIQNGRLITANP 356
Query: 360 VITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAV 419
++T+ + + +E +PPFG+SYIV+G G+K + W + GS+IGK FEAT RGA+RMA+
Sbjct: 357 IVTD--KEKPVNIEAEPPFGESYIVVGAGEKALKLSWFKKGSSIGKMFEATARGARRMAI 414
Query: 420 LGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGS 479
LGDTAWDFGS+GGVF S+GK +HQIFG A+ LF G+SW +I IG LL WLGLN+++ S
Sbjct: 415 LGDTAWDFGSIGGVFTSVGKLVHQIFGTAYGVLFSGVSWTMKIGIGILLTWLGLNSRSTS 474
Query: 480 ISLTCLALGGVMIFLSTAVSA 500
+S+TC+A+G V ++L V A
Sbjct: 475 LSMTCIAVGMVTLYLGVMVQA 495
>4B03:1:A,B,C|pdbid|entity|chain(s)|sequence
Length = 495
Score = 618 bits (1594), Expect = e-177, Method: Compositional matrix adjust.
Identities = 293/501 (58%), Positives = 372/501 (74%), Gaps = 7/501 (1%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
+RC+G+SNRDFVEG+S WVDVVLEHG CVT MA+DKPT+DIEL+ T V+N A +R C
Sbjct: 1 MRCVGISNRDFVEGLSATGWVDVVLEHGSCVTTMAKDKPTLDIELLKTEVTNPAILRKLC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
EA IS+ +DSRCPTQGEA L ++ DT +VC+RT VDRGWGNGCGLFGKGSL+TCAKF
Sbjct: 61 IEAKISNTTTDSRCPTQGEATLVEEQDTNFVCRRTFVDRGWGNGCGLFGKGSLITCAKFK 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVH-GSQHSGMIGYETDEDRAKVEVTPNSPRAEATLGGF 179
C K+ GK +Q ENL+Y ++++VH G QH +G ET E +TP +P +E L +
Sbjct: 121 CVTKLEGKIVQYENLKYSVIVTVHTGDQHQ--VGNETTEHGTTATITPQAPTSEIQLTDY 178
Query: 180 GSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALV 239
G+L LDC PRTGLDF+++ LTM K WLVHK+WF D+PLPW +GA T WN ++ LV
Sbjct: 179 GALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 238
Query: 240 EFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGV 299
FK AHAK+Q VVVLGSQEGA+HTAL GA E + G +F+GHLKCRLKMDKL LKGV
Sbjct: 239 TFKTAHAKKQEVVVLGSQEGAMHTALTGATEIQTSGTT-TIFAGHLKCRLKMDKLTLKGV 297
Query: 300 SYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLITANP 359
SY +CT +F K AET HGTV V+V+Y GTD PCKIP + D + + GRLITANP
Sbjct: 298 SYVMCTGSFKLEKEVAETQHGTVLVQVKYEGTDAPCKIPFS-SQDEKGVIQNGRLITANP 356
Query: 360 VITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAV 419
++T+ + + +E +PPFG+SYIV+G G+K + W + GS+IGK FEAT RGA+RMA+
Sbjct: 357 IVTD--KEKPVNIEAEPPFGESYIVVGAGEKALKLSWFKKGSSIGKMFEATARGARRMAI 414
Query: 420 LGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGS 479
LGDTAWDFGS+GGVF S+GK +HQIFG A+ LF G+SW +I IG LL WLGLN+++ S
Sbjct: 415 LGDTAWDFGSIGGVFTSVGKLVHQIFGTAYGVLFSGVSWTMKIGIGILLTWLGLNSRSTS 474
Query: 480 ISLTCLALGGVMIFLSTAVSA 500
+S+TC+A+G V ++L V A
Sbjct: 475 LSMTCIAVGMVTLYLGVMVQA 495
>4C2I:1:A,C,E|pdbid|entity|chain(s)|sequence
Length = 495
Score = 615 bits (1587), Expect = e-176, Method: Compositional matrix adjust.
Identities = 291/501 (58%), Positives = 370/501 (73%), Gaps = 7/501 (1%)
Query: 1 IRCIGVSNRDFVEGMSGGTWVDVVLEHGGCVTVMAQDKPTVDIELVTTTVSNMAEVRSYC 60
+RC+G+SNRDFVEG+S WVDVVLEHG CVT MA+DKPT+DIEL+ T V+N A +R C
Sbjct: 1 MRCVGISNRDFVEGLSATGWVDVVLEHGSCVTTMAKDKPTLDIELLKTEVTNPAVLRKLC 60
Query: 61 YEASISDMASDSRCPTQGEAYLDKQSDTQYVCKRTLVDRGWGNGCGLFGKGSLVTCAKFT 120
EA IS+ +DSRCPTQGEA L ++ D +VC+RT VDRGWGNGCGLFGKGSL+TCAKF
Sbjct: 61 IEAKISNTTTDSRCPTQGEATLVEEQDANFVCRRTFVDRGWGNGCGLFGKGSLITCAKFK 120
Query: 121 CSKKMTGKSIQPENLEYRIMLSVH-GSQHSGMIGYETDEDRAKVEVTPNSPRAEATLGGF 179
C K+ GK +Q ENL+Y ++++VH G QH +G E+ E +TP +P E L +
Sbjct: 121 CVTKLEGKIVQYENLKYSVIVTVHTGDQHQ--VGNESTEHGTTATITPQAPTTEIQLTDY 178
Query: 180 GSLGLDCEPRTGLDFSDLYYLTMNNKHWLVHKEWFHDIPLPWHAGADTGTPHWNNKEALV 239
G+L LDC PRTGLDF+++ LTM K WLVHK+WF D+PLPW +GA T WN ++ LV
Sbjct: 179 GALTLDCSPRTGLDFNEMVLLTMKEKSWLVHKQWFLDLPLPWTSGASTSQETWNRQDLLV 238
Query: 240 EFKDAHAKRQTVVVLGSQEGAVHTALAGALEAEMDGAKGRLFSGHLKCRLKMDKLRLKGV 299
FK AHAK+Q VVVLGSQEGA+HTAL GA E + G +F+GHLKCRLKMDKL LKG+
Sbjct: 239 TFKTAHAKKQEVVVLGSQEGAMHTALTGATEIQTSGTT-TIFAGHLKCRLKMDKLTLKGM 297
Query: 300 SYSLCTAAFTFTKVPAETLHGTVTVEVQYAGTDGPCKIPVQMAVDMQTLTPVGRLITANP 359
SY +CT +F K AET HGTV V+++Y GTD PCKIP D + +T GRLITANP
Sbjct: 298 SYVMCTGSFKLEKEVAETQHGTVLVQIKYEGTDAPCKIPFSTQ-DEKGVTQNGRLITANP 356
Query: 360 VITESTENSKMMLELDPPFGDSYIVIGVGDKKITHHWHRSGSTIGKAFEATVRGAKRMAV 419
++T+ + + +E +PPFG+SYIVIG G+K + W + GS+IGK FEAT RGA+RMA+
Sbjct: 357 IVTD--KEKPVNIEAEPPFGESYIVIGAGEKALKLSWFKKGSSIGKMFEATARGARRMAI 414
Query: 420 LGDTAWDFGSVGGVFNSLGKGIHQIFGAAFKSLFGGMSWFSQILIGTLLVWLGLNTKNGS 479
LGDTAWDFGS+GGVF S+GK +HQIFG A+ LF G+SW +I IG LL WLGLN+++ S
Sbjct: 415 LGDTAWDFGSIGGVFTSVGKLVHQIFGTAYGVLFSGVSWTMKIGIGVLLTWLGLNSRSTS 474
Query: 480 ISLTCLALGGVMIFLSTAVSA 500
+S+TC+A+G V ++L V A
Sbjct: 475 LSMTCIAVGLVTLYLGVMVQA 495
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.319 0.135 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 44,194,694
Number of extensions: 1942814
Number of successful extensions: 4695
Number of sequences better than 10.0: 107
Number of HSP's gapped: 4488
Number of HSP's successfully gapped: 109
Length of query: 500
Length of database: 42,273,433
Length adjustment: 110
Effective length of query: 390
Effective length of database: 23,259,383
Effective search space: 9071159370
Effective search space used: 9071159370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Templates and their alignment with Membrane protein query sequence
Query Sequence:
>YP_002790881.1-Membrane
TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPDDVDCWCNTTSTWVVYGTCHHKKGEARRSRAVTLPSHSTRKLQTRSQTWLESREYTKHLIKVENWIFRNPGFALVAVAIAWLLGSSTSQKVIYLVMILLIAPAYS
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-Membrane
(164 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
4B03:2:D,E,F|pdbid|entity|chain(s)|sequence 154 4e-38
5IZ7:2:D,E,F|pdbid|entity|chain(s)|sequence 129 3e-30
5IRE:2:B,D,F|pdbid|entity|chain(s)|sequence 129 3e-30
3C6E:2:C|pdbid|entity|chain(s)|sequence 119 2e-27
3C5X:2:C|pdbid|entity|chain(s)|sequence 119 2e-27
3IYA:2:D,E,F|pdbid|entity|chain(s)|sequence 92 3e-19
3C6R:2:D,E,F|pdbid|entity|chain(s)|sequence 92 3e-19
3J42:2:D,E,F|pdbid|entity|chain(s)|sequence 92 4e-19
3IXY:2:D,E,F|pdbid|entity|chain(s)|sequence 92 4e-19
3C6D:2:D,E,F|pdbid|entity|chain(s)|sequence 92 4e-19
>4B03:2:D,E,F|pdbid|entity|chain(s)|sequence
Length = 166
Score = 154 bits (390), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T RG +M + + + GK++ F T+ GVN C + MDLG +C+ TM+Y+CP + E EPD
Sbjct: 4 TTRGGEPHMIVSKQERGKSLLFKTSAGVNMCTLIAMDLGELCEDTMTYKCPRITE-TEPD 62
Query: 61 DVDCWCNTTSTWVVYGTCHHKKGEARRSRAVTLPSHSTRKLQTRSQTWLESREYTKHLIK 120
DVDCWCN T TWV YGTC R R+V L H L+TR++TW+ S K + K
Sbjct: 63 DVDCWCNATETWVTYGTCSQTGEHRRDKRSVALAPHVGLGLETRTETWMSSEGAWKQIQK 122
Query: 121 VENWIFRNPGFALVAVAIAWLLGSSTSQKVIYLVMILLIAPAYS 164
VE W +PGF ++A+ +A +G+S +QK I ++++L+ P+ +
Sbjct: 123 VETWALGHPGFTVIALFLAHAIGTSITQKGIIFILLMLVTPSMA 166
>5IZ7:2:D,E,F|pdbid|entity|chain(s)|sequence
Length = 75
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/75 (96%), Positives = 73/75 (97%)
Query: 90 AVTLPSHSTRKLQTRSQTWLESREYTKHLIKVENWIFRNPGFALVAVAIAWLLGSSTSQK 149
AVTLPSHSTRKLQTRSQTWLESREYTKHLI+VENWIFRNPGFAL A AIAWLLGSSTSQK
Sbjct: 1 AVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQK 60
Query: 150 VIYLVMILLIAPAYS 164
VIYLVMILLIAPAYS
Sbjct: 61 VIYLVMILLIAPAYS 75
>5IRE:2:B,D,F|pdbid|entity|chain(s)|sequence
Length = 75
Score = 129 bits (323), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/75 (96%), Positives = 73/75 (97%)
Query: 90 AVTLPSHSTRKLQTRSQTWLESREYTKHLIKVENWIFRNPGFALVAVAIAWLLGSSTSQK 149
AVTLPSHSTRKLQTRSQTWLESREYTKHLI+VENWIFRNPGFAL A AIAWLLGSSTSQK
Sbjct: 1 AVTLPSHSTRKLQTRSQTWLESREYTKHLIRVENWIFRNPGFALAAAAIAWLLGSSTSQK 60
Query: 150 VIYLVMILLIAPAYS 164
VIYLVMILLIAPAYS
Sbjct: 61 VIYLVMILLIAPAYS 75
>3C6E:2:C|pdbid|entity|chain(s)|sequence
Length = 130
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T R +M + R + GK++ F T GVN C + MDLG +C+ T++Y+CP+L + EP+
Sbjct: 4 TTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQN-EPE 62
Query: 61 DVDCWCNTTSTWVVYGTCHHKKGEARRSRAVTLPSHSTRKLQTRSQTWLESREYTKHLIK 120
D+DCWCN+TSTWV YGTC + +V L H L+TR++TW+ S KH+ +
Sbjct: 63 DIDCWCNSTSTWVTYGTCTTMGEHSTEKSSVALVPHVGMGLETRTETWMSSEGAWKHVQR 122
Query: 121 VENWIFRN 128
+E WI R+
Sbjct: 123 IETWILRH 130
>3C5X:2:C|pdbid|entity|chain(s)|sequence
Length = 130
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T R +M + R + GK++ F T GVN C + MDLG +C+ T++Y+CP+L + EP+
Sbjct: 4 TTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQN-EPE 62
Query: 61 DVDCWCNTTSTWVVYGTCHHKKGEARRSRAVTLPSHSTRKLQTRSQTWLESREYTKHLIK 120
D+DCWCN+TSTWV YGTC + +V L H L+TR++TW+ S KH+ +
Sbjct: 63 DIDCWCNSTSTWVTYGTCTTMGEHSTEKSSVALVPHVGMGLETRTETWMSSEGAWKHVQR 122
Query: 121 VENWIFRN 128
+E WI R+
Sbjct: 123 IETWILRH 130
>3IYA:2:D,E,F|pdbid|entity|chain(s)|sequence
Length = 81
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T R +M + R + GK++ F T GVN C + MDLG +C+ T++Y+CP+L + EP+
Sbjct: 4 TTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTLTYKCPLLRQN-EPE 62
Query: 61 DVDCWCNTTSTWVVYGTC 78
D+DCWCN+TSTWV YGTC
Sbjct: 63 DIDCWCNSTSTWVTYGTC 80
>3C6R:2:D,E,F|pdbid|entity|chain(s)|sequence
Length = 81
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T R +M + R + GK++ F T GVN C + MDLG +C+ T++Y+CP+L + EP+
Sbjct: 4 TTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTLTYKCPLLRQN-EPE 62
Query: 61 DVDCWCNTTSTWVVYGTC 78
D+DCWCN+TSTWV YGTC
Sbjct: 63 DIDCWCNSTSTWVTYGTC 80
>3J42:2:D,E,F|pdbid|entity|chain(s)|sequence
Length = 81
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T R +M + R + GK++ F T GVN C + MDLG +C+ T++Y+CP+L + EP+
Sbjct: 4 TTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQN-EPE 62
Query: 61 DVDCWCNTTSTWVVYGTC 78
D+DCWCN+TSTWV YGTC
Sbjct: 63 DIDCWCNSTSTWVTYGTC 80
>3IXY:2:D,E,F|pdbid|entity|chain(s)|sequence
Length = 81
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T R +M + R + GK++ F T GVN C + MDLG +C+ T++Y+CP+L + EP+
Sbjct: 4 TTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQN-EPE 62
Query: 61 DVDCWCNTTSTWVVYGTC 78
D+DCWCN+TSTWV YGTC
Sbjct: 63 DIDCWCNSTSTWVTYGTC 80
>3C6D:2:D,E,F|pdbid|entity|chain(s)|sequence
Length = 81
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 1 TRRGSAYYMYLDRSDAGKAISFATTLGVNKCHVQIMDLGHMCDATMSYECPMLDEGVEPD 60
T R +M + R + GK++ F T GVN C + MDLG +C+ T++Y+CP+L + EP+
Sbjct: 4 TTRNGEPHMIVSRQEKGKSLLFKTEDGVNMCTLMAMDLGELCEDTITYKCPLLRQN-EPE 62
Query: 61 DVDCWCNTTSTWVVYGTC 78
D+DCWCN+TSTWV YGTC
Sbjct: 63 DIDCWCNSTSTWVTYGTC 80
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.322 0.132 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 13,710,116
Number of extensions: 500727
Number of successful extensions: 977
Number of sequences better than 10.0: 26
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 26
Length of query: 164
Length of database: 42,273,433
Length adjustment: 98
Effective length of query: 66
Effective length of database: 25,333,643
Effective search space: 1672020438
Effective search space used: 1672020438
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Templates and their alignment with NS1 protein query sequence
Query Sequence:
>YP_002790881.1-NS1
VGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVSRMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKSYFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFL
VEDHGFGVFHTSVWLKVREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRSTTASGRV
IEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTAGS
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-NS1
(353 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
4O6B:1:A,B|pdbid|entity|chain(s)|sequence 431 e-120
4TPL:1:A,B|pdbid|entity|chain(s)|sequence 429 e-120
4O6D:1:A|pdbid|entity|chain(s)|sequence 429 e-120
4O6C:1:A,B,C,D,E,F|pdbid|entity|chain(s)|sequence 429 e-120
4O6D:2:B|pdbid|entity|chain(s)|sequence 428 e-120
5IY3:1:A,B|pdbid|entity|chain(s)|sequence 368 e-102
4OIG:1:A,B,D,E|pdbid|entity|chain(s)|sequence 249 4e-66
4OII:1:A,B|pdbid|entity|chain(s)|sequence 236 3e-62
4OIE:1:A|pdbid|entity|chain(s)|sequence 234 1e-61
>4O6B:1:A,B|pdbid|entity|chain(s)|sequence
Length = 376
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 192/350 (54%), Positives = 256/350 (73%)
Query: 2 GCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVSR 61
GC V + KE +CG+G+FI ++V W ++YK+ P+SP +LA+A+++A EEGICGI SV+R
Sbjct: 27 GCVVSWKNKELKCGSGIFITDNVHTWTEQYKFQPESPSKLASAIQKAHEEGICGIRSVTR 86
Query: 62 MENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKSY 121
+EN+MWK + ELN IL EN V+LT++ G +K M G + L EL + WK WGK+
Sbjct: 87 LENLMWKQITPELNHILSENEVKLTIMTGDIKGIMQAGKRSLRPQPTELKYSWKTWGKAK 146
Query: 122 FVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDPA 181
+ N +F++DG ECP +RAWNS VED+GFGVF T++WLK++E + CD
Sbjct: 147 MLSTESHNQTFLIDGPETAECPNTNRAWNSLEVEDYGFGVFTTNIWLKLKEKQDVFCDSK 206
Query: 182 VIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDLI 241
++ A+K A H+D+GYWIES NDTW++++A IE+K C WPKSHTLW++GV ES++I
Sbjct: 207 LMSAAIKDNRAVHADMGYWIESALNDTWKIEKASFIEVKNCHWPKSHTLWSNGVLESEMI 266
Query: 242 IPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRSTT 301
IPK+LAGP+S HN R GY TQ+ GPWH +LE+ F+ C GT V V E CG RGPSLR+TT
Sbjct: 267 IPKNLAGPVSQHNYRPGYHTQITGPWHLGKLEMDFDFCDGTTVVVTEDCGNRGPSLRTTT 326
Query: 302 ASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA 351
ASG++I EWCCR CT+PPL +R +DGCWYGMEIRP KE E NLV S+VTA
Sbjct: 327 ASGKLITEWCCRSCTLPPLRYRGEDGCWYGMEIRPLKEKEENLVNSLVTA 376
>4TPL:1:A,B|pdbid|entity|chain(s)|sequence
Length = 377
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 258/351 (73%)
Query: 1 VGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVS 60
GC++D S++E RCG+GVFI+NDVEAW DRYKY+P++P+ LA +++A +EG+CG+ SVS
Sbjct: 27 TGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVS 86
Query: 61 RMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKS 120
R+E+ MW++V+ ELN +L+ENGV L+VVV + P+RL +L GWKAWGKS
Sbjct: 87 RLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKS 146
Query: 121 YFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDP 180
NN+FVVDG KECP ++RAWNS VED GFG+ T ++LKVRE + ECD
Sbjct: 147 ILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDS 206
Query: 181 AVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDL 240
+IGTAVK A HSDL YWIES NDTW+L+RA L E+K+C WP++HTLW DG+ ESDL
Sbjct: 207 KIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDL 266
Query: 241 IIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRST 300
IIP +LAGP S+HN R GY+TQ +GPW +EI F+ CPGT V + E+CG RGP+ R+T
Sbjct: 267 IIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTT 326
Query: 301 TASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA 351
T SG++I +WCCR CT+PPL ++ GCWYGMEIRP++ E LV+S V A
Sbjct: 327 TESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA 377
>4O6D:1:A|pdbid|entity|chain(s)|sequence
Length = 377
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 258/351 (73%)
Query: 1 VGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVS 60
GC++D S++E RCG+GVFI+NDVEAW DRYKY+P++P+ LA +++A +EG+CG+ SVS
Sbjct: 27 TGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVS 86
Query: 61 RMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKS 120
R+E+ MW++V+ ELN +L+ENGV L+VVV + P+RL +L GWKAWGKS
Sbjct: 87 RLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKS 146
Query: 121 YFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDP 180
NN+FVVDG KECP ++RAWNS VED GFG+ T ++LKVRE + ECD
Sbjct: 147 ILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDS 206
Query: 181 AVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDL 240
+IGTAVK A HSDL YWIES NDTW+L+RA L E+K+C WP++HTLW DG+ ESDL
Sbjct: 207 KIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDL 266
Query: 241 IIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRST 300
IIP +LAGP S+HN R GY+TQ +GPW +EI F+ CPGT V + E+CG RGP+ R+T
Sbjct: 267 IIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTT 326
Query: 301 TASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA 351
T SG++I +WCCR CT+PPL ++ GCWYGMEIRP++ E LV+S V A
Sbjct: 327 TESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA 377
>4O6C:1:A,B,C,D,E,F|pdbid|entity|chain(s)|sequence
Length = 377
Score = 429 bits (1102), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 258/351 (73%)
Query: 1 VGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVS 60
GC++D S++E RCG+GVFI+NDVEAW DRYKY+P++P+ LA +++A +EG+CG+ SVS
Sbjct: 27 TGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVS 86
Query: 61 RMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKS 120
R+E+ MW++V+ ELN +L+ENGV L+VVV + P+RL +L GWKAWGKS
Sbjct: 87 RLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKS 146
Query: 121 YFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDP 180
NN+FVVDG KECP ++RAWNS VED GFG+ T ++LKVRE + ECD
Sbjct: 147 ILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDS 206
Query: 181 AVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDL 240
+IGTAVK A HSDL YWIES NDTW+L+RA L E+K+C WP++HTLW DG+ ESDL
Sbjct: 207 KIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDL 266
Query: 241 IIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRST 300
IIP +LAGP S+HN R GY+TQ +GPW +EI F+ CPGT V + E+CG RGP+ R+T
Sbjct: 267 IIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTT 326
Query: 301 TASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA 351
T SG++I +WCCR CT+PPL ++ GCWYGMEIRP++ E LV+S V A
Sbjct: 327 TESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA 377
>4O6D:2:B|pdbid|entity|chain(s)|sequence
Length = 377
Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/351 (56%), Positives = 258/351 (73%)
Query: 1 VGCSVDFSKKETRCGTGVFIYNDVEAWRDRYKYHPDSPRRLAAAVKQAWEEGICGISSVS 60
GC++D S++E RCG+GVFI+NDVEAW DRYKY+P++P+ LA +++A +EG+CG+ SVS
Sbjct: 27 TGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVS 86
Query: 61 RMENIMWKSVEGELNAILEENGVQLTVVVGSVKNPMWRGPQRLPVPVNELPHGWKAWGKS 120
R+E+ MW++V+ ELN +L+ENGV L+VVV + P+RL +L GWKAWGKS
Sbjct: 87 RLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATTEKLEIGWKAWGKS 146
Query: 121 YFVRAAKTNNSFVVDGDTLKECPLEHRAWNSFLVEDHGFGVFHTSVWLKVREDYSLECDP 180
NN+FVVDG KECP ++RAWNS VED GFG+ T ++LKVRE + ECD
Sbjct: 147 ILFAPELANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDS 206
Query: 181 AVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTLWTDGVEESDL 240
+IGTAVK A HSDL YWIES NDTW+L+RA L E+K+C WP++HTLW DG+ ESDL
Sbjct: 207 KIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDL 266
Query: 241 IIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETCGTRGPSLRST 300
IIP +LAGP S+HN R GY+TQ +GPW +EI F+ CPGT V + E+CG RGP+ R+T
Sbjct: 267 IIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSESCGHRGPATRTT 326
Query: 301 TASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVTA 351
T SG++I +WCCR CT+PPL ++ GCWYGMEIRP++ E LV+S V A
Sbjct: 327 TESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQVNA 377
>5IY3:1:A,B|pdbid|entity|chain(s)|sequence
Length = 181
Score = 368 bits (945), Expect = e-102, Method: Compositional matrix adjust.
Identities = 176/181 (97%), Positives = 180/181 (99%)
Query: 171 REDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTL 230
REDYSLECDPAVIGTAVKG+EA HSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTL
Sbjct: 1 REDYSLECDPAVIGTAVKGKEAVHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHTL 60
Query: 231 WTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEETC 290
WTDG+EESDLIIPKSLAGPLSHHNTREGYRTQ+KGPWHSEELEIRFEECPGTKV+VEETC
Sbjct: 61 WTDGIEESDLIIPKSLAGPLSHHNTREGYRTQMKGPWHSEELEIRFEECPGTKVHVEETC 120
Query: 291 GTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVT 350
GTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVT
Sbjct: 121 GTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMVT 180
Query: 351 A 351
A
Sbjct: 181 A 181
>4OIG:1:A,B,D,E|pdbid|entity|chain(s)|sequence
Length = 185
Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 111/182 (60%), Positives = 140/182 (76%)
Query: 170 VREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHT 229
+R+ Y+ CD ++ A+K +A H+D+GYWIESEKN+TW+L RA IE+KTC WPKSHT
Sbjct: 4 MRDSYTQVCDHRLMSAAIKDSKAVHADMGYWIESEKNETWKLARASFIEVKTCIWPKSHT 63
Query: 230 LWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEET 289
LW++GV ES++IIPK GP+S HN R GY TQ GPWH +LE+ F+ C GT V V+E
Sbjct: 64 LWSNGVLESEMIIPKIYGGPISQHNYRPGYFTQTAGPWHLGKLELDFDLCEGTTVVVDEH 123
Query: 290 CGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMV 349
CG RGPSLR+TT +G+ I EWCCR CT+PPL F+ +DGCWYGMEIRP KE E NLV+SMV
Sbjct: 124 CGNRGPSLRTTTVTGKTIHEWCCRSCTLPPLRFKGEDGCWYGMEIRPVKEKEENLVKSMV 183
Query: 350 TA 351
+A
Sbjct: 184 SA 185
>4OII:1:A,B|pdbid|entity|chain(s)|sequence
Length = 185
Score = 236 bits (603), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 107/182 (58%), Positives = 136/182 (74%)
Query: 170 VREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHT 229
+RE + ECD +IGTAVK A HSDL YWIES NDTW+L+RA L E+K+C WP++HT
Sbjct: 4 MRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHT 63
Query: 230 LWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEET 289
LW DG+ ESDLIIP +LAGP S+HN R GY+TQ +GPW +EI F+ CPGT V + E+
Sbjct: 64 LWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSES 123
Query: 290 CGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMV 349
CG RGP+ R+TT SG++I +WCCR CT+PPL ++ GCWYGMEIRP++ E LV+S V
Sbjct: 124 CGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQV 183
Query: 350 TA 351
A
Sbjct: 184 NA 185
>4OIE:1:A|pdbid|entity|chain(s)|sequence
Length = 185
Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 105/182 (57%), Positives = 136/182 (74%)
Query: 170 VREDYSLECDPAVIGTAVKGREAAHSDLGYWIESEKNDTWRLKRAHLIEMKTCEWPKSHT 229
+RE + ECD ++GTAVK A HSDL YWIES NDTW+L+RA L E+K+C WP++HT
Sbjct: 4 MRESNTTECDSKIMGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHT 63
Query: 230 LWTDGVEESDLIIPKSLAGPLSHHNTREGYRTQVKGPWHSEELEIRFEECPGTKVYVEET 289
LW DG+ ESD+IIP +LAGP S+HN R GY+TQ +GPW +EI F+ CPGT V + E+
Sbjct: 64 LWGDGILESDMIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDFDYCPGTTVTLSES 123
Query: 290 CGTRGPSLRSTTASGRVIEEWCCRECTMPPLSFRAKDGCWYGMEIRPRKEPESNLVRSMV 349
CG RGP+ R+TT SG++I +WCCR CT+PPL ++ GCWYGMEIRP++ E LV+S V
Sbjct: 124 CGHRGPATRTTTESGKLITDWCCRSCTLPPLRYQTDSGCWYGMEIRPQRHDEKTLVQSQV 183
Query: 350 TA 351
A
Sbjct: 184 NA 185
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.317 0.134 0.439
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 33,712,713
Number of extensions: 1445079
Number of successful extensions: 2729
Number of sequences better than 10.0: 20
Number of HSP's gapped: 2772
Number of HSP's successfully gapped: 20
Length of query: 353
Length of database: 42,273,433
Length adjustment: 107
Effective length of query: 246
Effective length of database: 23,777,948
Effective search space: 5849375208
Effective search space used: 5849375208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Templates and their alignment with NS2B protein query sequence
Query Sequence
>YP_002790881.1-NS2B
PSEVLTAVGLICALAGGFAKADIEMAGPMAAVGLLIVSYVVSGKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEEDGPPMREIILKVVLMAICGMNPIAIPFAAGAWYVYVKTGKR
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-NS2B
(127 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
2YOL:1:A|pdbid|entity|chain(s)|sequence 61 4e-10
2FP7:1:A|pdbid|entity|chain(s)|sequence 61 5e-10
2IJO:1:A|pdbid|entity|chain(s)|sequence 60 7e-10
2GGV:1:A|pdbid|entity|chain(s)|sequence 57 6e-09
3E90:1:A,C|pdbid|entity|chain(s)|sequence 56 2e-08
2WV9:1:A|pdbid|entity|chain(s)|sequence 54 6e-08
2M9Q:1:A|pdbid|entity|chain(s)|sequence 45 4e-05
2M9P:1:A|pdbid|entity|chain(s)|sequence 45 4e-05
4M9T:1:A|pdbid|entity|chain(s)|sequence 43 1e-04
4M9M:1:A|pdbid|entity|chain(s)|sequence 43 1e-04
>2YOL:1:A|pdbid|entity|chain(s)|sequence
Length = 230
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 34/45 (75%)
Query: 46 VDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEEDGPP 90
DM+IER DITWE DAE+TG+S R+DV LD+ G+F L+ + G P
Sbjct: 5 TDMWIERTADITWESDAEITGSSERVDVRLDDDGNFQLMNDPGAP 49
>2FP7:1:A|pdbid|entity|chain(s)|sequence
Length = 54
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 35/47 (74%)
Query: 46 VDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEEDGPPMR 92
DM+IER DITWE DAE+TG+S R+DV LD+ G+F L+ + G P +
Sbjct: 7 TDMWIERTADITWESDAEITGSSERVDVRLDDDGNFQLMNDPGAPWK 53
>2IJO:1:A|pdbid|entity|chain(s)|sequence
Length = 58
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 45 SVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEEDGPP 90
S DM+IER DI+WE DAE+TG+S R+DV LD+ G+F L+ + G P
Sbjct: 2 STDMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMNDPGAP 47
>2GGV:1:A|pdbid|entity|chain(s)|sequence
Length = 56
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 45 SVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEE 86
S DM+IER DI+WE DAE+TG+S R+DV LD+ G+F L+ +
Sbjct: 2 STDMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMND 43
>3E90:1:A,C|pdbid|entity|chain(s)|sequence
Length = 50
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 46 VDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEEDG 88
DM+IER DI+WE DAE+TG+S R+DV LD+ G+F L+ + G
Sbjct: 3 TDMWIERTADISWESDAEITGSSERVDVRLDDDGNFQLMNDPG 45
>2WV9:1:A|pdbid|entity|chain(s)|sequence
Length = 673
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 45 SVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEE 86
+ DM++ERA D++WE A +TG S RLDV LD+ GDF L+ +
Sbjct: 1 ATDMWLERAADVSWEAGAAITGTSERLDVQLDDDGDFHLLND 42
>2M9Q:1:A|pdbid|entity|chain(s)|sequence
Length = 240
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 43 GKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEED 87
G + D+ +ERA D+ WE AE++G+SP L + + E G S+ E+
Sbjct: 1 GSAADLELERAADVKWEDQAEISGSSPILSITISEDGSMSIKNEE 45
>2M9P:1:A|pdbid|entity|chain(s)|sequence
Length = 240
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 43 GKSVDMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEED 87
G + D+ +ERA D+ WE AE++G+SP L + + E G S+ E+
Sbjct: 1 GSAADLELERAADVKWEDQAEISGSSPILSITISEDGSMSIKNEE 45
>4M9T:1:A|pdbid|entity|chain(s)|sequence
Length = 247
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 47 DMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEED 87
D+ +ERA D+ WE+ AE++G+SP L + + E G S+ E+
Sbjct: 8 DLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEE 48
>4M9M:1:A|pdbid|entity|chain(s)|sequence
Length = 247
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 28/41 (68%)
Query: 47 DMYIERAGDITWEKDAEVTGNSPRLDVALDESGDFSLVEED 87
D+ +ERA D+ WE+ AE++G+SP L + + E G S+ E+
Sbjct: 8 DLELERAADVRWEEQAEISGSSPILSITISEDGSMSIKNEE 48
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.319 0.138 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 10,968,414
Number of extensions: 431463
Number of successful extensions: 765
Number of sequences better than 10.0: 31
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 31
Length of query: 127
Length of database: 42,273,433
Length adjustment: 88
Effective length of query: 39
Effective length of database: 27,062,193
Effective search space: 1055425527
Effective search space used: 1055425527
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Templates and their alignment with NS3 protein query sequence
Query Sequence
>YP_002790881.1-NS3
SGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKDGDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSY
VSAITQGKREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGT
RDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETDEG
HAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-NS3
(617 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
5JMT:1:A|pdbid|entity|chain(s)|sequence 911 0.0
2WV9:1:A|pdbid|entity|chain(s)|sequence 889 0.0
2WZQ:1:A|pdbid|entity|chain(s)|sequence 877 0.0
2WHX:1:A|pdbid|entity|chain(s)|sequence 876 0.0
2VBC:1:A|pdbid|entity|chain(s)|sequence 874 0.0
2BMF:1:A,B|pdbid|entity|chain(s)|sequence 671 0.0
2BHR:1:A,B|pdbid|entity|chain(s)|sequence 671 0.0
2JLS:1:A|pdbid|entity|chain(s)|sequence 664 0.0
2JLZ:1:A,B|pdbid|entity|chain(s)|sequence 664 0.0
2JLX:1:A,B|pdbid|entity|chain(s)|sequence 664 0.0
>5JMT:1:A|pdbid|entity|chain(s)|sequence
Length = 450
Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/450 (97%), Positives = 444/450 (98%)
Query: 168 GKREEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRV 227
G EETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIK RLRTVILAPTRV
Sbjct: 1 GPGSEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRV 60
Query: 228 VAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEA 287
VAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNL IMDEA
Sbjct: 61 VAAEMEEALRGLPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEA 120
Query: 288 HFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSS 347
HFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSS
Sbjct: 121 HFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSS 180
Query: 348 GFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVI 407
GFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTK+QEWDFV+
Sbjct: 181 GFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVV 240
Query: 408 TTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKP 467
TTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKP
Sbjct: 241 TTDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKP 300
Query: 468 GDEYMYGGGCAETDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTE 527
GDEY+YGGGCAETDE HAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTE
Sbjct: 301 GDEYLYGGGCAETDEDHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTE 360
Query: 528 QRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEK 587
QRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWT++GEK
Sbjct: 361 QRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTRHGEK 420
Query: 588 RVLKPRWMDARVCSDHAALKSFKEFAAGKR 617
RVLKPRWMDARVCSDHAALKSFKEFAAGKR
Sbjct: 421 RVLKPRWMDARVCSDHAALKSFKEFAAGKR 450
>2WV9:1:A|pdbid|entity|chain(s)|sequence
Length = 673
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/616 (67%), Positives = 507/616 (82%), Gaps = 2/616 (0%)
Query: 4 LWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRSGEG 63
WD P+PK KG+TT GVYR+M R +LG Q GVGVM EGVFHT+WH T+GAA+ SGEG
Sbjct: 58 FWDTPSPKVYPKGDTTPGVYRIMARGILGRYQAGVGVMHEGVFHTLWHTTRGAAIMSGEG 117
Query: 64 RLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKDGDI 123
RL PYWG+VK+D V+Y GPWKLD W+G+ +VQ++ V PG+ A N+QT PGIFKT G+I
Sbjct: 118 RLTPYWGNVKEDRVTYGGPWKLDQKWNGVDDVQMIVVEPGKPAINVQTKPGIFKTAHGEI 177
Query: 124 GAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGKREEETPVECFEPSM 183
GAV+LDYP GTSGSPI++ G +IGLYGNGV++ NG+YVSAI QG+R EE E + P M
Sbjct: 178 GAVSLDYPIGTSGSPIVNSNGEIIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEM 237
Query: 184 LKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVRY 243
LKK+QLTVLDLHPGAGKTRR+LP+I+++AI+KRLRT +LAPTRVVAAEM EALRGLPVRY
Sbjct: 238 LKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLPVRY 297
Query: 244 MTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYIST 303
+T AV HSG EIVD+MCHAT T RL+ P+RVPNYNL +MDEAHFTDP+SIAARGYI+T
Sbjct: 298 LTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIAT 357
Query: 304 RVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFV 363
RVE GEAAAIFMTATPPGT D FPD+NSP+ D E+P+RAWSSGF+W+TD++GKTVWFV
Sbjct: 358 RVEAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEWITDYAGKTVWFV 417
Query: 364 PSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADRV 423
SV+ NEIA CL +AGKRVIQL+RK+++TE+ K KN +WDFVITTDISEMGANF A RV
Sbjct: 418 ASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGASRV 477
Query: 424 IDSRRCLKPVILD-GE-RVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAETD 481
ID R+ +KP ILD GE RVIL+ P +T ASAAQRRGR+GRNP++ GDEY YGGG +E D
Sbjct: 478 IDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDD 537
Query: 482 EGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDL 541
AHW EA++LLDNI+L +GL+A LY PE DK ++GE++LR E+RKTF+EL+K DL
Sbjct: 538 TMLAHWTEAKILLDNIHLPNGLVAQLYGPERDKTYTMDGEYRLRGEERKTFLELIKTADL 597
Query: 542 PVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDARVCS 601
PVWLAY+VAS GI Y DR+WCFDG +N I+ED+ E+ T+ GE++VLKPRW+DARV S
Sbjct: 598 PVWLAYKVASNGIQYNDRKWCFDGPRSNIILEDNNEVEIITRIGERKVLKPRWLDARVYS 657
Query: 602 DHAALKSFKEFAAGKR 617
DH +LK FK+FAAGKR
Sbjct: 658 DHQSLKWFKDFAAGKR 673
>2WZQ:1:A|pdbid|entity|chain(s)|sequence
Length = 619
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/619 (66%), Positives = 506/619 (81%), Gaps = 2/619 (0%)
Query: 1 SGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRS 60
SGALWDVP+P +K ++GVYR+M R L G TQVGVG+ EGVFHTMWHVT+G+ +
Sbjct: 1 SGALWDVPSPAATQKATLSEGVYRIMQRGLFGKTQVGVGIHMEGVFHTMWHVTRGSVICH 60
Query: 61 GEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKD 120
GRL+P W DV+ D++SY G W+L WD +VQ+LA+ PG+ +++QT PG+FKT
Sbjct: 61 ETGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLT 120
Query: 121 GDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGKREEETPVECFE 180
G+IGAV LD+ GTSGSPI++K G+VIGLYGNGVV K+G YVSAITQ +R E P +
Sbjct: 121 GEIGAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIGEGPDYEVD 180
Query: 181 PSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLP 240
+ +KK+LT++DLHPGAGKT+R+LP IVREA+K+RLRT+ILAPTRVVAAEMEEALRGLP
Sbjct: 181 EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLP 240
Query: 241 VRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGY 300
+RY T AV H+G EIVDLMCHATFT+RLL RVPNYNL +MDEAHFTDP S+AARGY
Sbjct: 241 IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGY 300
Query: 301 ISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTV 360
ISTRVEMGEAAAIFMTATPPG+ D FP SNSPI D E E+PER+W++GFDW+TD+ GKTV
Sbjct: 301 ISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTV 360
Query: 361 WFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKA 420
WFVPS++ GN+IA CL K+GKRVIQLSRKTF+TE+ KTK +WDFV+TTDISEMGANF+A
Sbjct: 361 WFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA 420
Query: 421 DRVIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCA 478
RVID RRCLKPVIL DG ERVILAGP+PVT ASAAQRRGRIGRNP + D+Y++ G
Sbjct: 421 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPL 480
Query: 479 ETDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKR 538
+ DE HAHW EA+MLLDNIY +G+I +L+ PE +K AI+GEF+LR EQRKTFVELM+R
Sbjct: 481 KNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRR 540
Query: 539 GDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDAR 598
GDLPVWL+Y+VASAGI+Y DR WCF G NN I+E+++ E+WT+ GEK+ L+P+W+DAR
Sbjct: 541 GDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDAR 600
Query: 599 VCSDHAALKSFKEFAAGKR 617
V +D ALK FKEFA+G++
Sbjct: 601 VYADPMALKDFKEFASGRK 619
>2WHX:1:A|pdbid|entity|chain(s)|sequence
Length = 618
Score = 876 bits (2263), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/619 (67%), Positives = 506/619 (81%), Gaps = 3/619 (0%)
Query: 1 SGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRS 60
SGALWDVP+P +K T+GVYR+M R L G TQVGVG+ EGVFHTMWHVT+G+ +
Sbjct: 1 SGALWDVPSPAAAQKATLTEGVYRIMQRGLFGKTQVGVGIHMEGVFHTMWHVTRGSVICH 60
Query: 61 GEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKD 120
GRL+P W DV+ D++SY G W+L WD +VQ+LA+ PG+ +++QT PG+FKT
Sbjct: 61 ESGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLT 120
Query: 121 GDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGKREEETPVECFE 180
G+IGAV LD+ GTSGSPI++K G+VIGLYGNGVV K+G YVSAITQ +R E E E
Sbjct: 121 GEIGAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIGEPDYEVDE 180
Query: 181 PSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLP 240
+ +KK+LT++DLHPGAGKT+R+LP IVREA+K+RLRT+ILAPTRVVAAEMEEALRGLP
Sbjct: 181 -DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLP 239
Query: 241 VRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGY 300
+RY T AV H+G EIVDLMCHATFT+RLL RVPNYNL +MDEAHFTDP S+AARGY
Sbjct: 240 IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGY 299
Query: 301 ISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTV 360
ISTRVEMGEAAAIFMTATPPG+ D FP SNSPI D E E+PER+W++GFDW+TD+ GKTV
Sbjct: 300 ISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTV 359
Query: 361 WFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKA 420
WFVPS++ GN+IA CL K+GKRVIQLSRKTF+TE+ KTK +WDFV+TTDISEMGANF+A
Sbjct: 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA 419
Query: 421 DRVIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCA 478
RVID RRCLKPVIL DG ERVILAGP+PVT ASAAQRRGRIGRNP + D+Y++ G
Sbjct: 420 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPL 479
Query: 479 ETDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKR 538
+ DE HAHW EA+MLLDNIY +G+I +L+ PE +K AI+GEF+LR EQRKTFVELM+R
Sbjct: 480 KNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRR 539
Query: 539 GDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDAR 598
GDLPVWL+Y+VASAGI+Y DR WCF G NN I+E+++ E+WT+ GEK+ L+P+W+DAR
Sbjct: 540 GDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDAR 599
Query: 599 VCSDHAALKSFKEFAAGKR 617
V +D ALK FKEFA+G++
Sbjct: 600 VYADPMALKDFKEFASGRK 618
>2VBC:1:A|pdbid|entity|chain(s)|sequence
Length = 618
Score = 874 bits (2258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/619 (66%), Positives = 506/619 (81%), Gaps = 3/619 (0%)
Query: 1 SGALWDVPAPKEVKKGETTDGVYRVMTRRLLGSTQVGVGVMQEGVFHTMWHVTKGAALRS 60
SGALWDVP+P +K ++GVYR+M R L G TQVGVG+ EGVFHTMWHVT+G+ +
Sbjct: 1 SGALWDVPSPAATQKATLSEGVYRIMQRGLFGKTQVGVGIHMEGVFHTMWHVTRGSVICH 60
Query: 61 GEGRLDPYWGDVKQDLVSYCGPWKLDAAWDGLSEVQLLAVPPGERARNIQTLPGIFKTKD 120
GRL+P W DV+ D++SY G W+L WD +VQ+LA+ PG+ +++QT PG+FKT
Sbjct: 61 ETGRLEPSWADVRNDMISYGGGWRLGDKWDKEEDVQVLAIEPGKNPKHVQTKPGLFKTLT 120
Query: 121 GDIGAVALDYPAGTSGSPILDKCGRVIGLYGNGVVIKNGSYVSAITQGKREEETPVECFE 180
G+IGAV LD+ GTSGSPI++K G+VIGLYGNGVV K+G YVSAITQ +R E E E
Sbjct: 121 GEIGAVTLDFKPGTSGSPIINKKGKVIGLYGNGVVTKSGDYVSAITQAERIGEPDYEVDE 180
Query: 181 PSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLP 240
+ +KK+LT++DLHPGAGKT+R+LP IVREA+K+RLRT+ILAPTRVVAAEMEEALRGLP
Sbjct: 181 -DIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLP 239
Query: 241 VRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGY 300
+RY T AV H+G EIVDLMCHATFT+RLL RVPNYNL +MDEAHFTDP S+AARGY
Sbjct: 240 IRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGY 299
Query: 301 ISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTV 360
ISTRVEMGEAAAIFMTATPPG+ D FP SNSPI D E E+PER+W++GFDW+TD+ GKTV
Sbjct: 300 ISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTV 359
Query: 361 WFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKA 420
WFVPS++ GN+IA CL K+GKRVIQLSRKTF+TE+ KTK +WDFV+TTDISEMGANF+A
Sbjct: 360 WFVPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRA 419
Query: 421 DRVIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCA 478
RVID RRCLKPVIL DG ERVILAGP+PVT ASAAQRRGRIGRNP + D+Y++ G
Sbjct: 420 GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPL 479
Query: 479 ETDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKR 538
+ DE HAHW EA+MLLDNIY +G+I +L+ PE +K AI+GEF+LR EQRKTFVELM+R
Sbjct: 480 KNDEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRR 539
Query: 539 GDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDAR 598
GDLPVWL+Y+VASAGI+Y DR WCF G NN I+E+++ E+WT+ GEK+ L+P+W+DAR
Sbjct: 540 GDLPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDAR 599
Query: 599 VCSDHAALKSFKEFAAGKR 617
V +D ALK FKEFA+G++
Sbjct: 600 VYADPMALKDFKEFASGRK 618
>2BMF:1:A,B|pdbid|entity|chain(s)|sequence
Length = 451
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/441 (71%), Positives = 373/441 (84%), Gaps = 2/441 (0%)
Query: 179 FEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRG 238
E + +KK+LT++DLHPGAGKT+R LP IVREAIK+ LRT+ILAPTRVVAAEMEEALRG
Sbjct: 11 IEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRG 70
Query: 239 LPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAAR 298
LP+RY T A+ H+G EIVDLMCHATFT RLL PIRVPNYNL IMDEAHFTDP+SIAAR
Sbjct: 71 LPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAAR 130
Query: 299 GYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGK 358
GYISTRVEMGEAA IFMTATPPG+RD FP SN+PIMD E E+PER+W+SG +WVTD GK
Sbjct: 131 GYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGK 190
Query: 359 TVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANF 418
TVWFVPS++ GN+IAACL K GK+VIQLSRKTF++E+ KT+ +WDFV+TTDISEMGANF
Sbjct: 191 TVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANF 250
Query: 419 KADRVIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGG 476
KA+RVID RRC+KPVIL DG ERVILAGPMPVTH+SAAQRRGR+GRNP D+Y+Y G
Sbjct: 251 KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 310
Query: 477 CAETDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELM 536
E DE AHW EA+MLLDNI +G+I S++ PE +KV AI+GE++LR E RKTFV+LM
Sbjct: 311 PLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLM 370
Query: 537 KRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMD 596
+RGDLPVWLAY+VA+ GI Y DRRWCFDG NN I+E++V E+WTK GE++ LKPRW+D
Sbjct: 371 RRGDLPVWLAYRVAAEGINYADRRWCFDGVKNNQILEENVEVEIWTKEGERKKLKPRWLD 430
Query: 597 ARVCSDHAALKSFKEFAAGKR 617
AR+ SD ALK FKEFAAG++
Sbjct: 431 ARIYSDPLALKEFKEFAAGRK 451
>2BHR:1:A,B|pdbid|entity|chain(s)|sequence
Length = 451
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/441 (71%), Positives = 373/441 (84%), Gaps = 2/441 (0%)
Query: 179 FEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRG 238
E + +KK+LT++DLHPGAGKT+R LP IVREAIK+ LRT+ILAPTRVVAAEMEEALRG
Sbjct: 11 IEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRG 70
Query: 239 LPVRYMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAAR 298
LP+RY T A+ H+G EIVDLMCHATFT RLL PIRVPNYNL IMDEAHFTDP+SIAAR
Sbjct: 71 LPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAAR 130
Query: 299 GYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGK 358
GYISTRVEMGEAA IFMTATPPG+RD FP SN+PIMD E E+PER+W+SG +WVTD GK
Sbjct: 131 GYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKGK 190
Query: 359 TVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANF 418
TVWFVPS++ GN+IAACL K GK+VIQLSRKTF++E+ KT+ +WDFV+TTDISEMGANF
Sbjct: 191 TVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVVTTDISEMGANF 250
Query: 419 KADRVIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGG 476
KA+RVID RRC+KPVIL DG ERVILAGPMPVTH+SAAQRRGR+GRNP D+Y+Y G
Sbjct: 251 KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 310
Query: 477 CAETDEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELM 536
E DE AHW EA+MLLDNI +G+I S++ PE +KV AI+GE++LR E RKTFV+LM
Sbjct: 311 PLENDEDCAHWKEAKMLLDNINTPEGIIPSMFEPEREKVDAIDGEYRLRGEARKTFVDLM 370
Query: 537 KRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMD 596
+RGDLPVWLAY+VA+ GI Y DRRWCFDG NN I+E++V E+WTK GE++ LKPRW+D
Sbjct: 371 RRGDLPVWLAYRVAAEGINYADRRWCFDGVKNNQILEENVEVEIWTKEGERKKLKPRWLD 430
Query: 597 ARVCSDHAALKSFKEFAAGKR 617
AR+ SD ALK FKEFAAG++
Sbjct: 431 ARIYSDPLALKEFKEFAAGRK 451
>2JLS:1:A|pdbid|entity|chain(s)|sequence
Length = 451
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/437 (71%), Positives = 374/437 (85%), Gaps = 2/437 (0%)
Query: 183 MLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVR 242
+ +KK+LT++DLHPGAGKT+R+LP IVREA+K+RLRT+ILAPTRVVAAEMEEALRGLP+R
Sbjct: 15 IFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIR 74
Query: 243 YMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYIS 302
Y T AV H+G EIVDLMCHATFT+RLL RVPNYNL +MDEAHFTDP S+AARGYIS
Sbjct: 75 YQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS 134
Query: 303 TRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWF 362
TRVEMGEAAAIFMTATPPG+ D FP SNSPI D E E+PER+W++GFDW+TD+ GKTVWF
Sbjct: 135 TRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWF 194
Query: 363 VPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADR 422
VPS++ GN+IA CL K+GKRVIQLSRKTF+TE+ KTK +WDFV+TTDISEMGANF+A R
Sbjct: 195 VPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAGR 254
Query: 423 VIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAET 480
VID RRCLKPVIL DG ERVILAGP+PVT ASAAQRRGRIGRNP + D+Y++ G +
Sbjct: 255 VIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN 314
Query: 481 DEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGD 540
DE HAHW EA+MLLDNIY +G+I +L+ PE +K AI+GEF+LR EQRKTFVELM+RGD
Sbjct: 315 DEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGD 374
Query: 541 LPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDARVC 600
LPVWL+Y+VASAGI+Y DR WCF G NN I+E+++ E+WT+ GEK+ L+P+W+DARV
Sbjct: 375 LPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVY 434
Query: 601 SDHAALKSFKEFAAGKR 617
+D ALK FKEFA+G++
Sbjct: 435 ADPMALKDFKEFASGRK 451
>2JLZ:1:A,B|pdbid|entity|chain(s)|sequence
Length = 451
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/437 (71%), Positives = 374/437 (85%), Gaps = 2/437 (0%)
Query: 183 MLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVR 242
+ +KK+LT++DLHPGAGKT+R+LP IVREA+K+RLRT+ILAPTRVVAAEMEEALRGLP+R
Sbjct: 15 IFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIR 74
Query: 243 YMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYIS 302
Y T AV H+G EIVDLMCHATFT+RLL RVPNYNL +MDEAHFTDP S+AARGYIS
Sbjct: 75 YQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS 134
Query: 303 TRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWF 362
TRVEMGEAAAIFMTATPPG+ D FP SNSPI D E E+PER+W++GFDW+TD+ GKTVWF
Sbjct: 135 TRVEMGEAAAIFMTATPPGSIDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWF 194
Query: 363 VPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADR 422
VPS++ GN+IA CL K+GKRVIQLSRKTF+TE+ KTK +WDFV+TTDISEMGANF+A R
Sbjct: 195 VPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAGR 254
Query: 423 VIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAET 480
VID RRCLKPVIL DG ERVILAGP+PVT ASAAQRRGRIGRNP + D+Y++ G +
Sbjct: 255 VIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN 314
Query: 481 DEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGD 540
DE HAHW EA+MLLDNIY +G+I +L+ PE +K AI+GEF+LR EQRKTFVELM+RGD
Sbjct: 315 DEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGD 374
Query: 541 LPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDARVC 600
LPVWL+Y+VASAGI+Y DR WCF G NN I+E+++ E+WT+ GEK+ L+P+W+DARV
Sbjct: 375 LPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVY 434
Query: 601 SDHAALKSFKEFAAGKR 617
+D ALK FKEFA+G++
Sbjct: 435 ADPMALKDFKEFASGRK 451
>2JLX:1:A,B|pdbid|entity|chain(s)|sequence
Length = 451
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/437 (71%), Positives = 374/437 (85%), Gaps = 2/437 (0%)
Query: 183 MLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKKRLRTVILAPTRVVAAEMEEALRGLPVR 242
+ +KK+LT++DLHPGAGKT+R+LP IVREA+K+RLRT+ILAPTRVVAAEMEEALRGLP+R
Sbjct: 15 IFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGLPIR 74
Query: 243 YMTTAVNVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLNIMDEAHFTDPSSIAARGYIS 302
Y T AV H+G EIVDLMCHATFT+RLL RVPNYNL +MDEAHFTDP S+AARGYIS
Sbjct: 75 YQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS 134
Query: 303 TRVEMGEAAAIFMTATPPGTRDAFPDSNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWF 362
TRVEMGEAAAIFMTATPPG+ D FP SNSPI D E E+PER+W++GFDW+TD+ GKTVWF
Sbjct: 135 TRVEMGEAAAIFMTATPPGSIDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWF 194
Query: 363 VPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKNQEWDFVITTDISEMGANFKADR 422
VPS++ GN+IA CL K+GKRVIQLSRKTF+TE+ KTK +WDFV+TTDISEMGANF+A R
Sbjct: 195 VPSIKAGNDIANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTDISEMGANFRAGR 254
Query: 423 VIDSRRCLKPVIL-DG-ERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYMYGGGCAET 480
VID RRCLKPVIL DG ERVILAGP+PVT ASAAQRRGRIGRNP + D+Y++ G +
Sbjct: 255 VIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKN 314
Query: 481 DEGHAHWLEARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGD 540
DE HAHW EA+MLLDNIY +G+I +L+ PE +K AI+GEF+LR EQRKTFVELM+RGD
Sbjct: 315 DEDHAHWTEAKMLLDNIYTPEGIIPTLFGPEREKTQAIDGEFRLRGEQRKTFVELMRRGD 374
Query: 541 LPVWLAYQVASAGITYTDRRWCFDGTTNNTIMEDSVPAEVWTKYGEKRVLKPRWMDARVC 600
LPVWL+Y+VASAGI+Y DR WCF G NN I+E+++ E+WT+ GEK+ L+P+W+DARV
Sbjct: 375 LPVWLSYKVASAGISYKDREWCFTGERNNQILEENMEVEIWTREGEKKKLRPKWLDARVY 434
Query: 601 SDHAALKSFKEFAAGKR 617
+D ALK FKEFA+G++
Sbjct: 435 ADPMALKDFKEFASGRK 451
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.318 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 55,987,268
Number of extensions: 2485354
Number of successful extensions: 5442
Number of sequences better than 10.0: 178
Number of HSP's gapped: 5330
Number of HSP's successfully gapped: 178
Length of query: 617
Length of database: 42,273,433
Length adjustment: 112
Effective length of query: 505
Effective length of database: 22,913,673
Effective search space: 11571404865
Effective search space used: 11571404865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)
Templates and their alignment with NS4B protein query sequence
Query Sequence
>YP_002790881.1-NS4B
NELGWLERTKNDIAHLMGRREEGATMGFSMDIDLRPASAWAIYAALTTLITPAVQHAVTTSYNNYSLMAMATQAGVLFGMGKGMPFMHGDLGVPLLMMGCYSQLTPLTLIVAIILLVAHYMYLIPGLQAAAARAAQKRTAAGIMKNPVVDGIVVTDIDTMT
IDPQVEKKMGQVLLIAVAISSAVLLRTAWGWGEAGALITAATSTLWEGSPNKYWNSSTATSLCNIFRGSYLAGASLIYTVTRNAGLVKRRGGGTGETLGEKWKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL
QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVDVFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTMMETMERLQRRHGGGLVRVPLCRNSTHEMYWVSGAK
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-NS4B
(477 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
4K6M:1:A,B|pdbid|entity|chain(s)|sequence 311 1e-84
2PXC:1:A|pdbid|entity|chain(s)|sequence 309 6e-84
2PXA:1:A,B|pdbid|entity|chain(s)|sequence 309 6e-84
2PX8:1:A,B|pdbid|entity|chain(s)|sequence 309 6e-84
2PX5:1:A,B|pdbid|entity|chain(s)|sequence 309 6e-84
2PX4:1:A|pdbid|entity|chain(s)|sequence 309 6e-84
2PX2:1:A,B|pdbid|entity|chain(s)|sequence 309 6e-84
3LKZ:1:A,B|pdbid|entity|chain(s)|sequence 298 9e-81
2OY0:1:A,B|pdbid|entity|chain(s)|sequence 298 1e-80
4CTK:1:A,C|pdbid|entity|chain(s)|sequence 291 2e-78
>4K6M:1:A,B|pdbid|entity|chain(s)|sequence
Length = 915
Score = 311 bits (797), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 172/214 (80%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LN MS EF+ Y++ I EV R EARRA ++ GGH VSRGSAK+RWL E+G++
Sbjct: 12 WKEKLNAMSREEFFKYRREAIIEVDRTEARRARRENNIVGGHPVSRGSAKLRWLVEKGFV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
P GKV+DLGCGRGGWSYYAAT++KVQEVRGYTKGG GHEEPML+QSYGWN+V LKSGVD
Sbjct: 72 SPIGKVIDLGCGRGGWSYYAATLKKVQEVRGYTKGGAGHEEPMLMQSYGWNLVSLKSGVD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +EP DTL CDIGESS SPEVEE RTLRVL M DWL + P FCIKVLCPY +
Sbjct: 132 VFYKPSEPSDTLFCDIGESSPSPEVEEQRTLRVLEMTSDWLHRGPREFCIKVLCPYMPKV 191
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E ME LQRR GGGLVR+PL RNS HEMYWVSGA
Sbjct: 192 IEKMEVLQRRFGGGLVRLPLSRNSNHEMYWVSGA 225
>2PXC:1:A|pdbid|entity|chain(s)|sequence
Length = 269
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 173/214 (80%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LN M EF+SY+K I EV R EARRA ++G GGH VSRG+AK+RWL ER ++
Sbjct: 12 WKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTAKLRWLVERRFV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
QP GKVVDLGCGRGGWSYYAAT++ VQEVRGYTKGGPGHEEPML+QSYGWNIV +KSGVD
Sbjct: 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E DTLLCDIGESS S E+EE RTLR+L MV DWL + P FCIK+LCPY +
Sbjct: 132 VFYKPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKV 191
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E +E LQRR GGGLVRVPL RNS HEMYWVSGA
Sbjct: 192 IEKLESLQRRFGGGLVRVPLSRNSNHEMYWVSGA 225
>2PXA:1:A,B|pdbid|entity|chain(s)|sequence
Length = 269
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 173/214 (80%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LN M EF+SY+K I EV R EARRA ++G GGH VSRG+AK+RWL ER ++
Sbjct: 12 WKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTAKLRWLVERRFV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
QP GKVVDLGCGRGGWSYYAAT++ VQEVRGYTKGGPGHEEPML+QSYGWNIV +KSGVD
Sbjct: 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E DTLLCDIGESS S E+EE RTLR+L MV DWL + P FCIK+LCPY +
Sbjct: 132 VFYKPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKV 191
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E +E LQRR GGGLVRVPL RNS HEMYWVSGA
Sbjct: 192 IEKLESLQRRFGGGLVRVPLSRNSNHEMYWVSGA 225
>2PX8:1:A,B|pdbid|entity|chain(s)|sequence
Length = 269
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 173/214 (80%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LN M EF+SY+K I EV R EARRA ++G GGH VSRG+AK+RWL ER ++
Sbjct: 12 WKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTAKLRWLVERRFV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
QP GKVVDLGCGRGGWSYYAAT++ VQEVRGYTKGGPGHEEPML+QSYGWNIV +KSGVD
Sbjct: 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E DTLLCDIGESS S E+EE RTLR+L MV DWL + P FCIK+LCPY +
Sbjct: 132 VFYKPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKV 191
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E +E LQRR GGGLVRVPL RNS HEMYWVSGA
Sbjct: 192 IEKLESLQRRFGGGLVRVPLSRNSNHEMYWVSGA 225
>2PX5:1:A,B|pdbid|entity|chain(s)|sequence
Length = 269
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 173/214 (80%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LN M EF+SY+K I EV R EARRA ++G GGH VSRG+AK+RWL ER ++
Sbjct: 12 WKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTAKLRWLVERRFV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
QP GKVVDLGCGRGGWSYYAAT++ VQEVRGYTKGGPGHEEPML+QSYGWNIV +KSGVD
Sbjct: 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E DTLLCDIGESS S E+EE RTLR+L MV DWL + P FCIK+LCPY +
Sbjct: 132 VFYKPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKV 191
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E +E LQRR GGGLVRVPL RNS HEMYWVSGA
Sbjct: 192 IEKLESLQRRFGGGLVRVPLSRNSNHEMYWVSGA 225
>2PX4:1:A|pdbid|entity|chain(s)|sequence
Length = 269
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 173/214 (80%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LN M EF+SY+K I EV R EARRA ++G GGH VSRG+AK+RWL ER ++
Sbjct: 12 WKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTAKLRWLVERRFV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
QP GKVVDLGCGRGGWSYYAAT++ VQEVRGYTKGGPGHEEPML+QSYGWNIV +KSGVD
Sbjct: 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E DTLLCDIGESS S E+EE RTLR+L MV DWL + P FCIK+LCPY +
Sbjct: 132 VFYKPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKV 191
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E +E LQRR GGGLVRVPL RNS HEMYWVSGA
Sbjct: 192 IEKLESLQRRFGGGLVRVPLSRNSNHEMYWVSGA 225
>2PX2:1:A,B|pdbid|entity|chain(s)|sequence
Length = 269
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 173/214 (80%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LN M EF+SY+K I EV R EARRA ++G GGH VSRG+AK+RWL ER ++
Sbjct: 12 WKEKLNAMGKEEFFSYRKEAILEVDRTEARRARREGNKVGGHPVSRGTAKLRWLVERRFV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
QP GKVVDLGCGRGGWSYYAAT++ VQEVRGYTKGGPGHEEPML+QSYGWNIV +KSGVD
Sbjct: 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLMQSYGWNIVTMKSGVD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E DTLLCDIGESS S E+EE RTLR+L MV DWL + P FCIK+LCPY +
Sbjct: 132 VFYKPSEISDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCPYMPKV 191
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E +E LQRR GGGLVRVPL RNS HEMYWVSGA
Sbjct: 192 IEKLESLQRRFGGGLVRVPLSRNSNHEMYWVSGA 225
>3LKZ:1:A,B|pdbid|entity|chain(s)|sequence
Length = 321
Score = 298 bits (764), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 171/214 (79%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK RLNQM+ EF Y+K I EV R A+ A K+G TGGH VSRG+AK+RWL ER +L
Sbjct: 33 WKERLNQMTKEEFTRYRKEAIIEVDRSAAKHARKEGNVTGGHPVSRGTAKLRWLVERRFL 92
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
+P GKV+DLGCGRGGW YY AT ++VQEVRGYTKGGPGHEEP LVQSYGWNIV +KSGVD
Sbjct: 93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVD 152
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E CDTLLCDIGESSSS EVEE RT+RVL MV DWL + P FC+KVLCPY +
Sbjct: 153 VFYRPSECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKV 212
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E ME LQRR+GGGLVR PL RNSTHEMYWVS A
Sbjct: 213 IEKMELLQRRYGGGLVRNPLSRNSTHEMYWVSRA 246
>2OY0:1:A,B|pdbid|entity|chain(s)|sequence
Length = 262
Score = 298 bits (763), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 151/214 (70%), Positives = 171/214 (79%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK RLNQM+ EF Y+K I EV R A+ A K+G TGGH VSRG+AK+RWL ER +L
Sbjct: 7 WKERLNQMTKEEFTRYRKEAIIEVDRSAAKHARKEGNVTGGHPVSRGTAKLRWLVERRFL 66
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
+P GKV+DLGCGRGGW YY AT ++VQEVRGYTKGGPGHEEP LVQSYGWNIV +KSGVD
Sbjct: 67 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVD 126
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF+ +E CDTLLCDIGESSSS EVEE RT+RVL MV DWL + P FC+KVLCPY +
Sbjct: 127 VFYRPSECCDTLLCDIGESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKV 186
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E ME LQRR+GGGLVR PL RNSTHEMYWVS A
Sbjct: 187 IEKMELLQRRYGGGLVRNPLSRNSTHEMYWVSRA 220
>4CTK:1:A,C|pdbid|entity|chain(s)|sequence
Length = 276
Score = 291 bits (744), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/214 (65%), Positives = 165/214 (77%), Gaps = 3/214 (1%)
Query: 263 WKARLNQMSALEFYSYKKSGITEVCREEARRALKDGVATGGHAVSRGSAKIRWLEERGYL 322
WK +LNQ+S EF YKKSGITEV R EA+ LK G T HAVSRGSAK++W ER +
Sbjct: 13 WKKKLNQLSRKEFDLYKKSGITEVDRTEAKEGLKRGETTH-HAVSRGSAKLQWFVERNMV 71
Query: 323 QPYGKVVDLGCGRGGWSYYAATIRKVQEVRGYTKGGPGHEEPMLVQSYGWNIVRLKSGVD 382
P G+V+DLGCGRGGWSYY A ++KV EVRGYTKGGPGHEEP+ + +YGWNIV+L SG D
Sbjct: 72 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKD 131
Query: 383 VFHMAAEPCDTLLCDIGESSSSPEVEETRTLRVLSMVGDWLEKRPGAFCIKVLCPYTSTM 442
VF++ E CDTLLCDIGESS SP VEE+RT+RVL MV WL+ FCIKVL PY T+
Sbjct: 132 VFYLPPEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN--NQFCIKVLNPYMPTV 189
Query: 443 METMERLQRRHGGGLVRVPLCRNSTHEMYWVSGA 476
+E +ERLQR+HGG LVR PL RNSTHEMYW+S
Sbjct: 190 IEHLERLQRKHGGMLVRNPLSRNSTHEMYWISNG 223
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.320 0.134 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 35,278,600
Number of extensions: 1324412
Number of successful extensions: 3782
Number of sequences better than 10.0: 48
Number of HSP's gapped: 3781
Number of HSP's successfully gapped: 48
Length of query: 477
Length of database: 42,273,433
Length adjustment: 109
Effective length of query: 368
Effective length of database: 23,432,238
Effective search space: 8623063584
Effective search space used: 8623063584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)
Templates and their alignment with NS5 protein query sequence
Query Sequence
>YP_002790881.1-NS5
KYEEDVNLGSGTRAVASCAEAPNMKIIGRRIERIRNEHAETWFLDENHPYRTWAYHGSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSNAALGAIFEE
EKEWKTAVEAVNDPRFWALVDREREHHLRGECHSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYADDTAGWDTRISKFDLENEALITNQMEEGHRTLALAVIKYTYQNKVVKV
LRPAEGGKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRKPEKVTRWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVPCRHQDELIGRARVSPGA
GWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDWVPTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGSTPGVL
BLASTP 2.2.18 [Mar-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= YP_002790881.1-NS5
(652 letters)
Database: pdb_polypeptide
172,855 sequences; 42,273,433 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
2HFZ:1:A|pdbid|entity|chain(s)|sequence 940 0.0
4K6M:1:A,B|pdbid|entity|chain(s)|sequence 927 0.0
4MTP:1:A,B,C,D|pdbid|entity|chain(s)|sequence 907 0.0
5DTO:1:A|pdbid|entity|chain(s)|sequence 906 0.0
4HDH:1:A,B|pdbid|entity|chain(s)|sequence 906 0.0
4HDG:1:A,B|pdbid|entity|chain(s)|sequence 906 0.0
4V0Q:1:A|pdbid|entity|chain(s)|sequence 905 0.0
4V0R:1:A|pdbid|entity|chain(s)|sequence 902 0.0
2HCS:1:A|pdbid|entity|chain(s)|sequence 897 0.0
2HCN:1:A|pdbid|entity|chain(s)|sequence 897 0.0
>2HFZ:1:A|pdbid|entity|chain(s)|sequence
Length = 639
Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/607 (72%), Positives = 515/607 (84%), Gaps = 3/607 (0%)
Query: 37 EHAETWFLDENHPYRTWAYHGSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDT 96
E++ TW DENHPYRTW YHGSYE GSASSLVNGVVRLLSKPWD +T VT +AMTDT
Sbjct: 23 EYSSTWHHDENHPYRTWNYHGSYEVKPTGSASSLVNGVVRLLSKPWDTITNVTTMAMTDT 82
Query: 97 TPYGQQRVFKEKVDTRVPDPQEGTRQVMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSN 156
TP+GQQRVFKEKVDT+ P+P EG + V+N ++WLW L + KRPR+C++EEFI KV SN
Sbjct: 83 TPFGQQRVFKEKVDTKAPEPPEGVKYVLNETTNWLWAFLAREKRPRMCSREEFIRKVNSN 142
Query: 157 AALGAIFEEEKEWKTAVEAVNDPRFWALVDREREHHLRGECHSCVYNMMGKREKKQGEFG 216
AALGA+FEE+ +W++A EAV DP+FW +VD ERE HLRGECH+C+YNMMGKREKK GEFG
Sbjct: 143 AALGAMFEEQNQWRSAREAVEDPKFWEMVDEEREAHLRGECHTCIYNMMGKREKKPGEFG 202
Query: 217 KAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAP 276
KAKGSRAIW+MWLGARFLEFEALGFLNEDHW+GR+NSGGGVEGLGLQ+LGYIL E+ P
Sbjct: 203 KAKGSRAIWFMWLGARFLEFEALGFLNEDHWLGRKNSGGGVEGLGLQKLGYILREVGTRP 262
Query: 277 GGKMYADDTAGWDTRISKFDLENEALITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEG 336
GG++YADDTAGWDTRI++ DLENEA + ++ HR LA A+I+ TY++KVVKV+RPA
Sbjct: 263 GGRIYADDTAGWDTRITRADLENEAKVLELLDGEHRRLARAIIELTYRHKVVKVMRPAAD 322
Query: 337 GKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRKPE--KV 394
G+TVMD+ISR+DQRGSGQVVTYALNTFTNL VQL+R ME E V+ D+ L K + KV
Sbjct: 323 GRTVMDVISREDQRGSGQVVTYALNTFTNLAVQLVRMMEGEGVIGPDDVEKLTKGKGPKV 382
Query: 395 TRWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNW 454
WL NG +RL RMAVSGDDCVVKP+DDRFA +L FLN M KVRKD QEWKPSTGW +W
Sbjct: 383 RTWLSENGEERLSRMAVSGDDCVVKPLDDRFATSLHFLNAMSKVRKDIQEWKPSTGWYDW 442
Query: 455 EEVPFCSHHFNKLYLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQ 514
++VPFCS+HF +L +KDGR++V PCR QDEL+GRAR+SPGAGW++R+TACLAKSYAQMW
Sbjct: 443 QQVPFCSNHFTELIMKDGRTLVTPCRGQDELVGRARISPGAGWNVRDTACLAKSYAQMWL 502
Query: 515 LLYFHRRDLRLMANAICSAVPVDWVPTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDH 574
LLYFHRRDLRLMANAICSAVPV+WVPTGRTTWSIH GEWMTTEDML VWNRVWIEEN+
Sbjct: 503 LLYFHRRDLRLMANAICSAVPVNWVPTGRTTWSIHAGGEWMTTEDMLEVWNRVWIEENEW 562
Query: 575 MEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDY 634
MEDKTPV KW+D+PY GKRED+WCGSLIG R R TWAENI+ +N VR IIGD EKY+DY
Sbjct: 563 MEDKTPVEKWSDVPYSGKREDIWCGSLIGTRARATWAENIQVAINQVRSIIGD-EKYVDY 621
Query: 635 LSTQVRY 641
+S+ RY
Sbjct: 622 MSSLKRY 628
>4K6M:1:A,B|pdbid|entity|chain(s)|sequence
Length = 915
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/643 (69%), Positives = 524/643 (81%), Gaps = 3/643 (0%)
Query: 1 KYEEDVNLGSGTRAVASCAEAPNMKXXXXXXXXXXNEHAETWFLDENHPYRTWAYHGSYE 60
KYEEDVNLGSGTRAV N + E A TW D HPYRTW YHGSYE
Sbjct: 253 KYEEDVNLGSGTRAVGKGEVHSNQEKIKKRIQKLKEEFATTWHKDPEHPYRTWTYHGSYE 312
Query: 61 APTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGT 120
GSASSLVNGVV+L+SKPWD + VT +AMTDTTP+GQQRVFKEKVDT+ P+P G
Sbjct: 313 VKATGSASSLVNGVVKLMSKPWDAIANVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPAGA 372
Query: 121 RQVMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPR 180
++V+N ++WLW L + KRPR+CTKEEFI KV SNAALGA+F E+ +W TA EAV+DPR
Sbjct: 373 KEVLNETTNWLWAYLSREKRPRLCTKEEFIKKVNSNAALGAVFAEQNQWSTAREAVDDPR 432
Query: 181 FWALVDREREHHLRGECHSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALG 240
FW +VD ERE+HLRGECH+C+YNMMGKREKK GEFGKAKGSRAIW+MWLGAR+LEFEALG
Sbjct: 433 FWEMVDEERENHLRGECHTCIYNMMGKREKKPGEFGKAKGSRAIWFMWLGARYLEFEALG 492
Query: 241 FLNEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYADDTAGWDTRISKFDLENE 300
FLNEDHW+ RENSGGGVEG G+Q+LGYIL ++ GGKMYADDTAGWDTRI++ DLENE
Sbjct: 493 FLNEDHWLSRENSGGGVEGSGVQKLGYILRDIAGKQGGKMYADDTAGWDTRITRTDLENE 552
Query: 301 ALITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEGGKTVMDIISRQDQRGSGQVVTYAL 360
A + ++ HR LA A+I+ TY++KVVKV+RPA GKTVMD+ISR+DQRGSGQVVTYAL
Sbjct: 553 AKVLELLDGEHRMLARAIIELTYRHKVVKVMRPAAEGKTVMDVISREDQRGSGQVVTYAL 612
Query: 361 NTFTNLVVQLIRNMEAEEVLEMQDLWLLRKPEKVT--RWLQSNGWDRLKRMAVSGDDCVV 418
NTFTN+ VQL+R MEAE V+ Q L L + K+ WL NG +R+ RMA+SGDDCVV
Sbjct: 613 NTFTNIAVQLVRLMEAEGVIGPQHLEQLPRKNKIAVRTWLFENGEERVTRMAISGDDCVV 672
Query: 419 KPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVP 478
KP+DDRFA AL FLN M KVRKD QEWKPS GW +W++VPFCS+HF ++ +KDGRSIVVP
Sbjct: 673 KPLDDRFATALHFLNAMSKVRKDIQEWKPSHGWHDWQQVPFCSNHFQEIVMKDGRSIVVP 732
Query: 479 CRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDW 538
CR QDELIGRAR+SPGAGW++++TACLAK+YAQMW LLYFHRRDLRLMANAICSAVPVDW
Sbjct: 733 CRGQDELIGRARISPGAGWNVKDTACLAKAYAQMWLLLYFHRRDLRLMANAICSAVPVDW 792
Query: 539 VPTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWC 598
VPTGRT+WSIH KGEWMTTEDML VWNRVWIEEN+ M DKTP+T WTD+PY+GKRED+WC
Sbjct: 793 VPTGRTSWSIHSKGEWMTTEDMLQVWNRVWIEENEWMMDKTPITSWTDVPYVGKREDIWC 852
Query: 599 GSLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLSTQVRY 641
GSLIG R R TWAENI +N VR +IG +E Y+DY+++ RY
Sbjct: 853 GSLIGTRSRATWAENIYAAINQVRAVIG-KENYVDYMTSLRRY 894
>4MTP:1:A,B,C,D|pdbid|entity|chain(s)|sequence
Length = 634
Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/607 (71%), Positives = 506/607 (83%), Gaps = 3/607 (0%)
Query: 37 EHAETWFLDENHPYRTWAYHGSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDT 96
E A TW D HPYRTW YHGSYE GSASSLVNGVV+L+SKPWD + VT +AMTDT
Sbjct: 18 EFATTWHKDPEHPYRTWTYHGSYEVKATGSASSLVNGVVKLMSKPWDAIANVTTMAMTDT 77
Query: 97 TPYGQQRVFKEKVDTRVPDPQEGTRQVMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSN 156
TP+GQQRVFKEKVDT+ P+P G R+V+N ++WLW L + KRPR+CTKEEFI KV SN
Sbjct: 78 TPFGQQRVFKEKVDTKAPEPPAGVREVLNETTNWLWAHLSREKRPRLCTKEEFIKKVNSN 137
Query: 157 AALGAIFEEEKEWKTAVEAVNDPRFWALVDREREHHLRGECHSCVYNMMGKREKKQGEFG 216
AALGA+F E+ +W TA EAVNDPRFW +VD ERE+HLRGECH+C+YNMMGKREKK GEFG
Sbjct: 138 AALGAVFAEQNQWSTAREAVNDPRFWEMVDEERENHLRGECHTCIYNMMGKREKKPGEFG 197
Query: 217 KAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAP 276
KAKGSRAIW+MWLGAR+LEFEALGFLNEDHW+ RENSGGGVEG G+Q+LGYIL ++
Sbjct: 198 KAKGSRAIWFMWLGARYLEFEALGFLNEDHWLSRENSGGGVEGSGVQKLGYILRDIAGKQ 257
Query: 277 GGKMYADDTAGWDTRISKFDLENEALITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEG 336
GGKMYADDTAGWDTRI++ DLENEA + ++ HR LA A+I+ TY++KVVKV+RPA
Sbjct: 258 GGKMYADDTAGWDTRITRTDLENEAKVLELLDGEHRMLARAIIELTYRHKVVKVMRPAAE 317
Query: 337 GKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRKPEKVT- 395
GKTVMD+ISR+DQRGSGQVVTYALNTFTN+ VQL+R MEAE V+ Q L L + K+
Sbjct: 318 GKTVMDVISREDQRGSGQVVTYALNTFTNIAVQLVRLMEAEGVIGPQHLEQLPRKNKIAV 377
Query: 396 -RWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNW 454
WL NG +R+ RMA+SGDDCVVKP+DDRFA AL FLN M KVRKD QEWKPS GW +W
Sbjct: 378 RTWLFENGEERVTRMAISGDDCVVKPLDDRFATALHFLNAMSKVRKDIQEWKPSHGWHDW 437
Query: 455 EEVPFCSHHFNKLYLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQ 514
++VPFCS+HF ++ +KDGRSIVVPCR QDELIGRAR+SPGAGW++++TACLAK+YAQMW
Sbjct: 438 QQVPFCSNHFQEIVMKDGRSIVVPCRGQDELIGRARISPGAGWNVKDTACLAKAYAQMWL 497
Query: 515 LLYFHRRDLRLMANAICSAVPVDWVPTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDH 574
LLYFHRRDLRLMANAICSAVPVDWVPTGRT+WSIH KGEWMTTEDML VWNRVWIEEN+
Sbjct: 498 LLYFHRRDLRLMANAICSAVPVDWVPTGRTSWSIHSKGEWMTTEDMLQVWNRVWIEENEW 557
Query: 575 MEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDY 634
M DKTP+ WTD+PY+GKRED+WCGSLIG R R TWAENI +N VR +IG +E Y+DY
Sbjct: 558 MMDKTPIASWTDVPYVGKREDIWCGSLIGTRSRATWAENIYAAINQVRAVIG-KENYVDY 616
Query: 635 LSTQVRY 641
+++ RY
Sbjct: 617 MTSLRRY 623
>5DTO:1:A|pdbid|entity|chain(s)|sequence
Length = 892
Score = 906 bits (2342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/648 (67%), Positives = 507/648 (78%), Gaps = 7/648 (1%)
Query: 3 EEDVNLGSGTRAVASCAEAPNMKXXXXXXXXXXNEHAETWFLDENHPYRTWAYHGSYEAP 62
E+DV+LG+GTR V + E PNM EH TW D+ +PY+TWAYHGSYE
Sbjct: 249 EKDVDLGAGTRHVNAEPETPNMDVIGERIKRIKEEHNSTWHYDDENPYKTWAYHGSYEVK 308
Query: 63 TQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQ 122
GSASS++NGVV+LL+KPWDVV VT +AMTDTTP+GQQRVFKEKVDTR P P GTR+
Sbjct: 309 ATGSASSMINGVVKLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTPRPLPGTRK 368
Query: 123 VMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFW 182
VM I + WLW+ LG+ KRPR+CT+EEF KVR+NAA+GA+F EE +W +A AV D FW
Sbjct: 369 VMEITAEWLWRTLGRNKRPRLCTREEFTKKVRTNAAMGAVFTEENQWDSAKAAVEDEEFW 428
Query: 183 ALVDREREHHLRGECHSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFL 242
LVDRERE H G+C SCVYNMMGKREKK GEFGKAKGSRAIWYMWLG R+LEFEALGFL
Sbjct: 429 KLVDRERELHKLGKCGSCVYNMMGKREKKLGEFGKAKGSRAIWYMWLGVRYLEFEALGFL 488
Query: 243 NEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYADDTAGWDTRISKFDLENEAL 302
NEDHW RENS GVEG GL +LGYIL ++++ PGG MYADDTAGWDTRI++ DL NE
Sbjct: 489 NEDHWFSRENSYSGVEGEGLHKLGYILRDISKIPGGAMYADDTAGWDTRITEDDLHNEEK 548
Query: 303 ITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEGGKTVMDIISRQDQRGSGQVVTYALNT 362
I QM+ HR LA A+ K TYQNKVVKV RP G TVMDIISR+DQRGSGQV TY LNT
Sbjct: 549 IIQQMDPEHRQLANAIFKLTYQNKVVKVQRPTPTG-TVMDIISRKDQRGSGQVGTYGLNT 607
Query: 363 FTNLVVQLIRNMEAEEVLEMQDL---WLLRKPEKVTRWLQSNGWDRLKRMAVSGDDCVVK 419
FTN+ QL+R ME E VL DL LL K K+T+WL++ G +RLKRMA+SGDDCVVK
Sbjct: 608 FTNMEAQLVRQMEGEGVLTKADLENPHLLEK--KITQWLETKGVERLKRMAISGDDCVVK 665
Query: 420 PIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVPC 479
PIDDRFA+AL LNDMGKVRKD +W+PS GW +W++VPFCSHHF++L +KDGR +VVPC
Sbjct: 666 PIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPC 725
Query: 480 RHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDWV 539
R QDELIGRAR+S GAGWSIRETACL K+YAQMW L+YFHRRDLRL +NAICSAVPV WV
Sbjct: 726 RPQDELIGRARISQGAGWSIRETACLGKAYAQMWSLMYFHRRDLRLASNAICSAVPVHWV 785
Query: 540 PTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCG 599
PT RTTWSIH +WMTTEDML VWNRVWIEEN MEDKTPVT W ++PYLGKRED WCG
Sbjct: 786 PTSRTTWSIHAHHQWMTTEDMLTVWNRVWIEENPWMEDKTPVTTWENVPYLGKREDQWCG 845
Query: 600 SLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGS 647
SLIG R TWA+NI + VR +IG+EE ++DY+ + R+ EE S
Sbjct: 846 SLIGLTSRATWAQNIPTAIQQVRSLIGNEE-FLDYMPSMKRFRKEEES 892
>4HDH:1:A,B|pdbid|entity|chain(s)|sequence
Length = 639
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/607 (71%), Positives = 506/607 (83%), Gaps = 3/607 (0%)
Query: 37 EHAETWFLDENHPYRTWAYHGSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDT 96
E A TW D HPYRTW YHGSYE GSASSLVNGVV+L+SKPWD + VT +AMTDT
Sbjct: 23 EFATTWHKDPEHPYRTWTYHGSYEVKATGSASSLVNGVVKLMSKPWDAIANVTTMAMTDT 82
Query: 97 TPYGQQRVFKEKVDTRVPDPQEGTRQVMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSN 156
TP+GQQRVFKEKVDT+ P+P G R+V+N ++WLW L + KRPR+CTKEEFI KV SN
Sbjct: 83 TPFGQQRVFKEKVDTKAPEPPAGVREVLNETTNWLWAHLSREKRPRLCTKEEFIKKVNSN 142
Query: 157 AALGAIFEEEKEWKTAVEAVNDPRFWALVDREREHHLRGECHSCVYNMMGKREKKQGEFG 216
AALGA+F E+ +W TA EAVNDPRFW +VD ERE+HLRGECH+C+YNMMGKREKK GEFG
Sbjct: 143 AALGAVFAEQNQWSTAREAVNDPRFWEMVDEERENHLRGECHTCIYNMMGKREKKPGEFG 202
Query: 217 KAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAP 276
KAKGSRAIW+MWLGAR+LEFEALGFLNEDHW+ RENSGGGVEG G+Q+LGYIL ++
Sbjct: 203 KAKGSRAIWFMWLGARYLEFEALGFLNEDHWLSRENSGGGVEGSGVQKLGYILRDIAGKQ 262
Query: 277 GGKMYADDTAGWDTRISKFDLENEALITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEG 336
GGKMYADDTAGWDTRI++ DLENEA + ++ HR LA A+I+ TY++KVVKV+RPA
Sbjct: 263 GGKMYADDTAGWDTRITRTDLENEAKVLELLDGEHRMLARAIIELTYRHKVVKVMRPAAE 322
Query: 337 GKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRKPEKVT- 395
GKTVMD+ISR+DQRGSGQVVTYALNTFTN+ VQL+R MEAE V+ Q L L + K+
Sbjct: 323 GKTVMDVISREDQRGSGQVVTYALNTFTNIAVQLVRLMEAEGVIGPQHLEQLPRKNKIAV 382
Query: 396 -RWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNW 454
WL NG +R+ RMA+SGDDCVVKP+DDRFA AL FLN M KVRKD QEWKPS GW +W
Sbjct: 383 RTWLFENGEERVTRMAISGDDCVVKPLDDRFATALHFLNAMSKVRKDIQEWKPSHGWHDW 442
Query: 455 EEVPFCSHHFNKLYLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQ 514
++VPFCS+HF ++ +KDGRSIVVPCR QDELIGRAR+SPGAGW++++TACLAK+YAQMW
Sbjct: 443 QQVPFCSNHFQEIVMKDGRSIVVPCRGQDELIGRARISPGAGWNVKDTACLAKAYAQMWL 502
Query: 515 LLYFHRRDLRLMANAICSAVPVDWVPTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDH 574
LLYFHRRDLRLMANAICSAVPVDWVPTGRT+WSIH KGEWMTTEDML VWNRVWIEEN+
Sbjct: 503 LLYFHRRDLRLMANAICSAVPVDWVPTGRTSWSIHSKGEWMTTEDMLQVWNRVWIEENEW 562
Query: 575 MEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDY 634
M DKTP+ WTD+PY+GKRED+WCGSLIG R R TWAENI +N VR +IG +E Y+DY
Sbjct: 563 MMDKTPIASWTDVPYVGKREDIWCGSLIGTRSRATWAENIYAAINQVRAVIG-KENYVDY 621
Query: 635 LSTQVRY 641
+++ RY
Sbjct: 622 MTSLRRY 628
>4HDG:1:A,B|pdbid|entity|chain(s)|sequence
Length = 639
Score = 906 bits (2341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/607 (71%), Positives = 506/607 (83%), Gaps = 3/607 (0%)
Query: 37 EHAETWFLDENHPYRTWAYHGSYEAPTQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDT 96
E A TW D HPYRTW YHGSYE GSASSLVNGVV+L+SKPWD + VT +AMTDT
Sbjct: 23 EFATTWHKDPEHPYRTWTYHGSYEVKATGSASSLVNGVVKLMSKPWDAIANVTTMAMTDT 82
Query: 97 TPYGQQRVFKEKVDTRVPDPQEGTRQVMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSN 156
TP+GQQRVFKEKVDT+ P+P G R+V+N ++WLW L + KRPR+CTKEEFI KV SN
Sbjct: 83 TPFGQQRVFKEKVDTKAPEPPAGVREVLNETTNWLWAHLSREKRPRLCTKEEFIKKVNSN 142
Query: 157 AALGAIFEEEKEWKTAVEAVNDPRFWALVDREREHHLRGECHSCVYNMMGKREKKQGEFG 216
AALGA+F E+ +W TA EAVNDPRFW +VD ERE+HLRGECH+C+YNMMGKREKK GEFG
Sbjct: 143 AALGAVFAEQNQWSTAREAVNDPRFWEMVDEERENHLRGECHTCIYNMMGKREKKPGEFG 202
Query: 217 KAKGSRAIWYMWLGARFLEFEALGFLNEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAP 276
KAKGSRAIW+MWLGAR+LEFEALGFLNEDHW+ RENSGGGVEG G+Q+LGYIL ++
Sbjct: 203 KAKGSRAIWFMWLGARYLEFEALGFLNEDHWLSRENSGGGVEGSGVQKLGYILRDIAGKQ 262
Query: 277 GGKMYADDTAGWDTRISKFDLENEALITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEG 336
GGKMYADDTAGWDTRI++ DLENEA + ++ HR LA A+I+ TY++KVVKV+RPA
Sbjct: 263 GGKMYADDTAGWDTRITRTDLENEAKVLELLDGEHRMLARAIIELTYRHKVVKVMRPAAE 322
Query: 337 GKTVMDIISRQDQRGSGQVVTYALNTFTNLVVQLIRNMEAEEVLEMQDLWLLRKPEKVT- 395
GKTVMD+ISR+DQRGSGQVVTYALNTFTN+ VQL+R MEAE V+ Q L L + K+
Sbjct: 323 GKTVMDVISREDQRGSGQVVTYALNTFTNIAVQLVRLMEAEGVIGPQHLEQLPRKNKIAV 382
Query: 396 -RWLQSNGWDRLKRMAVSGDDCVVKPIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNW 454
WL NG +R+ RMA+SGDDCVVKP+DDRFA AL FLN M KVRKD QEWKPS GW +W
Sbjct: 383 RTWLFENGEERVTRMAISGDDCVVKPLDDRFATALHFLNAMSKVRKDIQEWKPSHGWHDW 442
Query: 455 EEVPFCSHHFNKLYLKDGRSIVVPCRHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQ 514
++VPFCS+HF ++ +KDGRSIVVPCR QDELIGRAR+SPGAGW++++TACLAK+YAQMW
Sbjct: 443 QQVPFCSNHFQEIVMKDGRSIVVPCRGQDELIGRARISPGAGWNVKDTACLAKAYAQMWL 502
Query: 515 LLYFHRRDLRLMANAICSAVPVDWVPTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDH 574
LLYFHRRDLRLMANAICSAVPVDWVPTGRT+WSIH KGEWMTTEDML VWNRVWIEEN+
Sbjct: 503 LLYFHRRDLRLMANAICSAVPVDWVPTGRTSWSIHSKGEWMTTEDMLQVWNRVWIEENEW 562
Query: 575 MEDKTPVTKWTDIPYLGKREDLWCGSLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDY 634
M DKTP+ WTD+PY+GKRED+WCGSLIG R R TWAENI +N VR +IG +E Y+DY
Sbjct: 563 MMDKTPIASWTDVPYVGKREDIWCGSLIGTRSRATWAENIYAAINQVRAVIG-KENYVDY 621
Query: 635 LSTQVRY 641
+++ RY
Sbjct: 622 MTSLRRY 628
>4V0Q:1:A|pdbid|entity|chain(s)|sequence
Length = 892
Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/648 (67%), Positives = 507/648 (78%), Gaps = 7/648 (1%)
Query: 3 EEDVNLGSGTRAVASCAEAPNMKXXXXXXXXXXNEHAETWFLDENHPYRTWAYHGSYEAP 62
E+DV+LG+GTR V + E PNM EH TW D+ +PY+TWAYHGSYE
Sbjct: 249 EKDVDLGAGTRHVNAEPETPNMDVIGERIKRIKEEHNSTWHYDDENPYKTWAYHGSYEVK 308
Query: 63 TQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQ 122
GSASS++NGVV+LL+KPWDVV VT +AMTDTTP+GQQRVFKEKVDTR P P GTR+
Sbjct: 309 ATGSASSMINGVVKLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTPRPLPGTRK 368
Query: 123 VMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFW 182
VM I + WLW+ LG+ KRPR+CT+EEF KVR+NAA+GA+F EE +W +A AV D FW
Sbjct: 369 VMEITAEWLWRTLGRNKRPRLCTREEFTKKVRTNAAMGAVFTEENQWDSAKAAVEDEEFW 428
Query: 183 ALVDREREHHLRGECHSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFL 242
LVDRERE H G+C SCVYNMMGKREKK GEFGKAKGSRAIWYMWLG R+LEFEALGFL
Sbjct: 429 KLVDRERELHKLGKCGSCVYNMMGKREKKLGEFGKAKGSRAIWYMWLGVRYLEFEALGFL 488
Query: 243 NEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYADDTAGWDTRISKFDLENEAL 302
NEDHW RENS GVEG GL +LGYIL ++++ PGG MYADDTAGWDTRI++ DL NE
Sbjct: 489 NEDHWFSRENSYSGVEGEGLHKLGYILRDISKIPGGAMYADDTAGWDTRITEDDLHNEEK 548
Query: 303 ITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEGGKTVMDIISRQDQRGSGQVVTYALNT 362
I QM+ HR LA A+ K TYQNKVVKV RP G TVMDIISR+DQRGSGQV TY LNT
Sbjct: 549 IIQQMDPEHRQLANAIFKLTYQNKVVKVQRPTPTG-TVMDIISRKDQRGSGQVGTYGLNT 607
Query: 363 FTNLVVQLIRNMEAEEVLEMQDL---WLLRKPEKVTRWLQSNGWDRLKRMAVSGDDCVVK 419
FTN+ QL+R ME E VL DL LL K K+T+WL++ G +RLKRMA+SGDDCVVK
Sbjct: 608 FTNMEAQLVRQMEGEGVLTKADLENPHLLEK--KITQWLETKGVERLKRMAISGDDCVVK 665
Query: 420 PIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVPC 479
PIDDRFA+AL LNDMGKVRKD +W+PS GW +W++VPFCSHHF++L +KDGR +VVPC
Sbjct: 666 PIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPC 725
Query: 480 RHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDWV 539
R QDELIGRAR+S GAGWS+RETACL K+YAQMW L+YFHRRDLRL +NAICSAVPV WV
Sbjct: 726 RPQDELIGRARISQGAGWSLRETACLGKAYAQMWSLMYFHRRDLRLASNAICSAVPVHWV 785
Query: 540 PTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCG 599
PT RTTWSIH +WMTTEDML VWNRVWIEEN MEDKTPVT W ++PYLGKRED WCG
Sbjct: 786 PTSRTTWSIHAHHQWMTTEDMLTVWNRVWIEENPWMEDKTPVTTWENVPYLGKREDQWCG 845
Query: 600 SLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGS 647
SLIG R TWA+NI + VR +IG+EE ++DY+ + R+ EE S
Sbjct: 846 SLIGLTSRATWAQNIPTAIQQVRSLIGNEE-FLDYMPSMKRFRKEEES 892
>4V0R:1:A|pdbid|entity|chain(s)|sequence
Length = 892
Score = 902 bits (2332), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/648 (67%), Positives = 507/648 (78%), Gaps = 7/648 (1%)
Query: 3 EEDVNLGSGTRAVASCAEAPNMKXXXXXXXXXXNEHAETWFLDENHPYRTWAYHGSYEAP 62
E+DV+LG+GTR V + E PNM EH TW D+ +PY+TWAYHGSYE
Sbjct: 249 EKDVDLGAGTRHVNAEPETPNMDVIGERIKRIKEEHNSTWHYDDENPYKTWAYHGSYEVK 308
Query: 63 TQGSASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQ 122
GSASS++NGVV+LL+KPWDVV VT +AMTDTTP+GQQRVFKEKVDTR P P GTR+
Sbjct: 309 ATGSASSMINGVVKLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTPRPLPGTRK 368
Query: 123 VMNIVSSWLWKELGKRKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFW 182
VM I + WLW+ LG+ KRPR+CT+EEF KVR+NAA+GA+F EE ++ +A AV D FW
Sbjct: 369 VMEITAEWLWRTLGRNKRPRLCTREEFTKKVRTNAAMGAVFTEENQYDSAKAAVEDEEFW 428
Query: 183 ALVDREREHHLRGECHSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFL 242
LVDRERE H G+C SCVYNMMGKREKK GEFGKAKGSRAIWYMWLG R+LEFEALGFL
Sbjct: 429 KLVDRERELHKLGKCGSCVYNMMGKREKKLGEFGKAKGSRAIWYMWLGVRYLEFEALGFL 488
Query: 243 NEDHWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYADDTAGWDTRISKFDLENEAL 302
NEDHW RENS GVEG GL +LGYIL ++++ PGG MYADDTAGWDTRI++ DL NE
Sbjct: 489 NEDHWFSRENSYSGVEGEGLHKLGYILRDISKIPGGAMYADDTAGWDTRITEDDLHNEEK 548
Query: 303 ITNQMEEGHRTLALAVIKYTYQNKVVKVLRPAEGGKTVMDIISRQDQRGSGQVVTYALNT 362
I QM+ HR LA A+ K TYQNKVVKV RP G TVMDIISR+DQRGSGQV TY LNT
Sbjct: 549 IIQQMDPEHRQLANAIFKLTYQNKVVKVQRPTPTG-TVMDIISRKDQRGSGQVGTYGLNT 607
Query: 363 FTNLVVQLIRNMEAEEVLEMQDL---WLLRKPEKVTRWLQSNGWDRLKRMAVSGDDCVVK 419
FTN+ QL+R ME E VL DL LL K K+T+WL++ G +RLKRMA+SGDDCVVK
Sbjct: 608 FTNMEAQLVRQMEGEGVLTKADLENPHLLEK--KITQWLETKGVERLKRMAISGDDCVVK 665
Query: 420 PIDDRFAHALRFLNDMGKVRKDTQEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVPC 479
PIDDRFA+AL LNDMGKVRKD +W+PS GW +W++VPFCSHHF++L +KDGR +VVPC
Sbjct: 666 PIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPC 725
Query: 480 RHQDELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDWV 539
R QDELIGRAR+S GAGWS+RETACL K+YAQMW L+YFHRRDLRL +NAICSAVPV WV
Sbjct: 726 RPQDELIGRARISQGAGWSLRETACLGKAYAQMWSLMYFHRRDLRLASNAICSAVPVHWV 785
Query: 540 PTGRTTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCG 599
PT RTTWSIH +WMTTEDML VWNRVWIEEN MEDKTPVT W ++PYLGKRED WCG
Sbjct: 786 PTSRTTWSIHAHHQWMTTEDMLTVWNRVWIEENPWMEDKTPVTTWENVPYLGKREDQWCG 845
Query: 600 SLIGHRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLSTQVRYLGEEGS 647
SLIG R TWA+NI + VR +IG+EE ++DY+ + R+ EE S
Sbjct: 846 SLIGLTSRATWAQNIPTAIQQVRSLIGNEE-FLDYMPSMKRFRKEEES 892
>2HCS:1:A|pdbid|entity|chain(s)|sequence
Length = 595
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/578 (73%), Positives = 494/578 (85%), Gaps = 3/578 (0%)
Query: 66 SASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMN 125
SASSLVNGVVRLLSKPWD +T VT +AMTDTTP+GQQRVFKEKVDT+ P+P EG + V+N
Sbjct: 8 SASSLVNGVVRLLSKPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLN 67
Query: 126 IVSSWLWKELGKRKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFWALV 185
++WLW L + KRPR+C++EEFI KV SNAALGA+FEE+ +W++A EAV DP+FW +V
Sbjct: 68 ETTNWLWAFLAREKRPRMCSREEFIRKVNSNAALGAMFEEQNQWRSAREAVEDPKFWEMV 127
Query: 186 DREREHHLRGECHSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFLNED 245
D ERE HLRGECH+C+YNMMGKREKK GEFGKAKGSRAIW+MWLGARFLEFEALGFLNED
Sbjct: 128 DEEREAHLRGECHTCIYNMMGKREKKPGEFGKAKGSRAIWFMWLGARFLEFEALGFLNED 187
Query: 246 HWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYADDTAGWDTRISKFDLENEALITN 305
HW+GR+NSGGGVEGLGLQ+LGYIL E+ PGG++YADDTAGWDTRI++ DLENEA +
Sbjct: 188 HWLGRKNSGGGVEGLGLQKLGYILREVGTRPGGRIYADDTAGWDTRITRADLENEAKVLE 247
Query: 306 QMEEGHRTLALAVIKYTYQNKVVKVLRPAEGGKTVMDIISRQDQRGSGQVVTYALNTFTN 365
++ HR LA A+I+ TY++KVVKV+RPA G+TVMD+ISR+DQRGSGQVVTYALNTFTN
Sbjct: 248 LLDGEHRRLARAIIELTYRHKVVKVMRPAADGRTVMDVISREDQRGSGQVVTYALNTFTN 307
Query: 366 LVVQLIRNMEAEEVLEMQDLWLLRKPE--KVTRWLQSNGWDRLKRMAVSGDDCVVKPIDD 423
L VQL+R ME E V+ D+ L K + KV WL NG +RL RMAVSGDDCVVKP+DD
Sbjct: 308 LAVQLVRMMEGEGVIGPDDVEKLTKGKGPKVRTWLSENGEERLSRMAVSGDDCVVKPLDD 367
Query: 424 RFAHALRFLNDMGKVRKDTQEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVPCRHQD 483
RFA +L FLN M KVRKD QEWKPSTGW +W++VPFCS+HF +L +KDGR++V PCR QD
Sbjct: 368 RFATSLHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTELIMKDGRTLVTPCRGQD 427
Query: 484 ELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDWVPTGR 543
EL+GRAR+SPGAGW++R+TACLAKSYAQMW LLYFHRRDLRLMANAICSAVPV+WVPTGR
Sbjct: 428 ELVGRARISPGAGWNVRDTACLAKSYAQMWLLLYFHRRDLRLMANAICSAVPVNWVPTGR 487
Query: 544 TTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSLIG 603
TTWSIH GEWMTTEDML VWNRVWIEEN+ MEDKTPV KW+D+PY GKRED+WCGSLIG
Sbjct: 488 TTWSIHAGGEWMTTEDMLEVWNRVWIEENEWMEDKTPVEKWSDVPYSGKREDIWCGSLIG 547
Query: 604 HRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLSTQVRY 641
R R TWAENI+ +N VR IIGD EKY+DY+S+ RY
Sbjct: 548 TRARATWAENIQVAINQVRSIIGD-EKYVDYMSSLKRY 584
>2HCN:1:A|pdbid|entity|chain(s)|sequence
Length = 595
Score = 897 bits (2318), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/578 (73%), Positives = 494/578 (85%), Gaps = 3/578 (0%)
Query: 66 SASSLVNGVVRLLSKPWDVVTGVTGIAMTDTTPYGQQRVFKEKVDTRVPDPQEGTRQVMN 125
SASSLVNGVVRLLSKPWD +T VT +AMTDTTP+GQQRVFKEKVDT+ P+P EG + V+N
Sbjct: 8 SASSLVNGVVRLLSKPWDTITNVTTMAMTDTTPFGQQRVFKEKVDTKAPEPPEGVKYVLN 67
Query: 126 IVSSWLWKELGKRKRPRVCTKEEFINKVRSNAALGAIFEEEKEWKTAVEAVNDPRFWALV 185
++WLW L + KRPR+C++EEFI KV SNAALGA+FEE+ +W++A EAV DP+FW +V
Sbjct: 68 ETTNWLWAFLAREKRPRMCSREEFIRKVNSNAALGAMFEEQNQWRSAREAVEDPKFWEMV 127
Query: 186 DREREHHLRGECHSCVYNMMGKREKKQGEFGKAKGSRAIWYMWLGARFLEFEALGFLNED 245
D ERE HLRGECH+C+YNMMGKREKK GEFGKAKGSRAIW+MWLGARFLEFEALGFLNED
Sbjct: 128 DEEREAHLRGECHTCIYNMMGKREKKPGEFGKAKGSRAIWFMWLGARFLEFEALGFLNED 187
Query: 246 HWMGRENSGGGVEGLGLQRLGYILEEMNRAPGGKMYADDTAGWDTRISKFDLENEALITN 305
HW+GR+NSGGGVEGLGLQ+LGYIL E+ PGG++YADDTAGWDTRI++ DLENEA +
Sbjct: 188 HWLGRKNSGGGVEGLGLQKLGYILREVGTRPGGRIYADDTAGWDTRITRADLENEAKVLE 247
Query: 306 QMEEGHRTLALAVIKYTYQNKVVKVLRPAEGGKTVMDIISRQDQRGSGQVVTYALNTFTN 365
++ HR LA A+I+ TY++KVVKV+RPA G+TVMD+ISR+DQRGSGQVVTYALNTFTN
Sbjct: 248 LLDGEHRRLARAIIELTYRHKVVKVMRPAADGRTVMDVISREDQRGSGQVVTYALNTFTN 307
Query: 366 LVVQLIRNMEAEEVLEMQDLWLLRKPE--KVTRWLQSNGWDRLKRMAVSGDDCVVKPIDD 423
L VQL+R ME E V+ D+ L K + KV WL NG +RL RMAVSGDDCVVKP+DD
Sbjct: 308 LAVQLVRMMEGEGVIGPDDVEKLTKGKGPKVRTWLSENGEERLSRMAVSGDDCVVKPLDD 367
Query: 424 RFAHALRFLNDMGKVRKDTQEWKPSTGWSNWEEVPFCSHHFNKLYLKDGRSIVVPCRHQD 483
RFA +L FLN M KVRKD QEWKPSTGW +W++VPFCS+HF +L +KDGR++V PCR QD
Sbjct: 368 RFATSLHFLNAMSKVRKDIQEWKPSTGWYDWQQVPFCSNHFTELIMKDGRTLVTPCRGQD 427
Query: 484 ELIGRARVSPGAGWSIRETACLAKSYAQMWQLLYFHRRDLRLMANAICSAVPVDWVPTGR 543
EL+GRAR+SPGAGW++R+TACLAKSYAQMW LLYFHRRDLRLMANAICSAVPV+WVPTGR
Sbjct: 428 ELVGRARISPGAGWNVRDTACLAKSYAQMWLLLYFHRRDLRLMANAICSAVPVNWVPTGR 487
Query: 544 TTWSIHGKGEWMTTEDMLMVWNRVWIEENDHMEDKTPVTKWTDIPYLGKREDLWCGSLIG 603
TTWSIH GEWMTTEDML VWNRVWIEEN+ MEDKTPV KW+D+PY GKRED+WCGSLIG
Sbjct: 488 TTWSIHAGGEWMTTEDMLEVWNRVWIEENEWMEDKTPVEKWSDVPYSGKREDIWCGSLIG 547
Query: 604 HRPRTTWAENIKDTVNMVRRIIGDEEKYMDYLSTQVRY 641
R R TWAENI+ +N VR IIGD EKY+DY+S+ RY
Sbjct: 548 TRARATWAENIQVAINQVRSIIGD-EKYVDYMSSLKRY 584
Database: pdb_polypeptide
Posted date: May 29, 2016 5:24 AM
Number of letters in database: 42,273,433
Number of sequences in database: 172,855
Lambda K H
0.318 0.134 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 172855
Number of Hits to DB: 61,232,303
Number of extensions: 2696629
Number of successful extensions: 6208
Number of sequences better than 10.0: 51
Number of HSP's gapped: 6273
Number of HSP's successfully gapped: 51
Length of query: 652
Length of database: 42,273,433
Length adjustment: 112
Effective length of query: 540
Effective length of database: 22,913,673
Effective search space: 12373383420
Effective search space used: 12373383420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)